Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 295 2e-74 seq16 143 8e-29 seq13 122 3e-22 seq18 104 7e-17 seq10 98.7 3e-15 >seq1 Length=30011118 Score = 295 bits (326), Expect = 2e-74 Identities = 958/1474 (65%), Gaps = 23/1474 (2%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || |||||| | || || || || |||||||| | || | || ||| || Sbjct 12113638 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 12113697 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| || || ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 12113698 GAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACCGAC 12113757 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || ||| | | || || ||| |||| || || |||| ||| || || | || ||| Sbjct 12113758 ACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCACCAACACG 12113817 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 | |||||||| || || || ||||| ||||| ||| |||| || ||||| Sbjct 12113818 ATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCTGAC 12113877 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | |||| | || || | || | || || ||| | || || | | |||| Sbjct 12113878 ATGAAACTCTGGCCGTTCAAGGT-GATC--AACGACAACGGAAAGCCCAAAGTCCAGGTG 12113934 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 ||||||||||| ||| || ||| | || ||||| ||||| || ||||| | ||| Sbjct 12113935 GAATATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCCTGGTT 12113994 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||| ||||| ||||| || | | | || | | || | |||| || || || Sbjct 12113995 AAAATGAGAGAAATAGCTGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCACA 12114054 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || ||||| || ||||||||| |||| | || ||||| |||||||| || | Sbjct 12114055 GTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCTCC 12114114 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || |||||||||| | || || ||||| || || |||||||| ||||| || || ||| Sbjct 12114115 GGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCTACGGCCTT 12114174 Query 349742 GATAAA---ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 |||||| | || | ||| || | || || |||||| | ||||| || ||| Sbjct 12114175 GATAAAGGCAAAAGAG---GAGAGCGCAACGTCCTCATCTTTGATCTTGGTGGAGGCACT 12114231 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||||| || || | || || |||| || || || ||||| || ||| | || || || Sbjct 12114232 TTTGACGTGTCCATCCTGACCATTGAGGATGGCATATTTGAGGTGAAATCCACAGCCGGG 12114291 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || ||||| || || ||||| |||||||| || || | || || ||||| | || Sbjct 12114292 GACACACACCTCGGCGGAGAGGATTTTGACAACCGAATGGTCAGCCACTTTGTGGAGGAG 12114351 Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| | |||| || | || || | | || |||||| || | | || | Sbjct 12114352 TTTAAAAG-AAAGCACAAGAAGGACATCAGCCAGAACAAGAGAGCAGTGAGGAGACTGCG 12114410 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 || || ||||| | || ||| | |||| || || | || || | ||||| || Sbjct 12114411 CACAGCTTGTGAGAGAGCAAAGAGGACCTTGTCCTCCAGCACTCAGGCAAGCATTGAGAT 12114470 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||| || || ||| |||| || || | | || || ||| | || || || || || Sbjct 12114471 TGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGA 12114530 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || || ||||| | |||| |||| || || || || | || ||||||| Sbjct 12114531 GCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGC 12114590 Query 350158 AAAAATGTCCAAAAATC--AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || || | ||||| |||| | ||||| || |||||||||| |||||| | || Sbjct 12114591 TAAGCTG--GATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGTGGCTCTACAAGAATC 12114648 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAAT 350274 || ||| | ||| || | || || || || ||||| | ||||| | ||| | || Sbjct 12114649 CCCAAAATCCAAAAGCTCCTGCAGGACTTCTTCAATGGTAGAGAACTAAACAAGAGC-AT 12114707 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || |||||||| || || |||||||| || || ||||| |||| | ||| Sbjct 12114708 CAACCCTGATGAAGCGGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCT-CATGG--G 12114764 Query 350335 TAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 | | | || ||| || | ||| || | || || ||||| | || | ||||| || Sbjct 12114765 TGACACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGTCGCTGGG 12114824 Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451 | || || | |||| || ||||| |||||| |||| | || | || || Sbjct 12114825 CATTGAGACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCAC 12114884 Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGT 350511 ||| || | || | || || |||| ||||||| ||||||| || ||||| || Sbjct 12114885 AAAGCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCTGATTCAGGT 12114944 Query 350512 ATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAG 350571 | ||||||||| | || || || || || ||| || || | ||| || Sbjct 12114945 CTATGAAGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTC 12115004 Query 350572 TGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTC 350631 || |||| || || ||||| || || ||||| ||||| | || ||||| || | Sbjct 12115005 TGGTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGATATCGACGC 12115064 Query 350632 AAATGGTATTTTAAATGTTACCGCAGTTGAAAAA 350665 || || || ||||||| | || || || ||| Sbjct 12115065 CAACGGCATCCTAAATGTGTCTGCCGTCGACAAA 12115098 Score = 154 bits (170), Expect = 4e-32 Identities = 562/875 (64%), Gaps = 6/875 (1%) Strand=Plus/Minus Query 182919 ACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGT 182978 ||||||| || || || | ||| | |||||| | ||||| |||||||| || |||| Sbjct 12115082 ACATTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCGATCTGTGGCACGCCTCTG 12115023 Query 182979 GGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTT 183038 || || |||| |||| | ||| | || | ||| || || || || | Sbjct 12115022 GGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATTGTTGTCCTTTGTCATG 12114963 Query 183039 GCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAA 183098 |||||||| |||||||| || ||||| ||| ||||||| ||||| || || || Sbjct 12114962 GCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTTATCTGAGTATGTGGAG 12114903 Query 183099 AAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTACT 183158 || | || | | || | || || || | |||||| | || ||||| || Sbjct 12114902 AAGATCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGATAAGAGGTGTCATAACG 12114843 Query 183159 TCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCT--G 183216 | | ||| || || | || | || || ||||| ||||| || | | ||||||| | Sbjct 12114842 CCACCGGCTGTCTCAATGCCCAGCGACAAGGGTGCCACATCCAGGAGCAGTAAATCTTGG 12114783 Query 183217 ATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAA 183276 | |||| |||| | | | | | || ||||| || || ||||||||||| || | Sbjct 12114782 ACATTTT--CTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTGCTGCACCATAGGCCA 12114725 Query 183277 CAGCTTCATCTGGGTTAATTGAACGAG-ATAATTCTTTGCCATTAAAAAATTCTGAAAGC 183335 | |||||||| ||||| | || | | || |||| | ||||| || || || || Sbjct 12114724 CCGCTTCATCAGGGTTGA-TGCTCTTGTTTAGTTCTCTACCATTGAAGAAGTCCTGCAGG 12114666 Query 183336 ATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGATATTA 183395 | | ||| ||||| || ||||| || || ||||| |||| || ||||| | ||| || Sbjct 12114665 AGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAACTTCGTGGATCTTG 12114606 Query 183396 CTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAAT 183455 |||| | | | ||||| || | || ||||| || |||| ||| ||||| Sbjct 12114605 GATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCAGTGTTCCCCTAAAG 12114546 Query 183456 AAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCA 183515 | ||| | ||| || || | ||| || || | || | |||||||||| || Sbjct 12114545 AGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGTGATTGAGGTGTAAAAGTCAATGCCC 12114486 Query 183516 TTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCT 183575 | | | | || ||||| ||||| || || || || || || || || || ||| Sbjct 12114485 TCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGACAAGGTCCTCTTTGCT 12114426 Query 183576 CGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTTTA 183635 | ||||| ||||| | |||| | | || ||| || | | || || | || Sbjct 12114425 CTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTGGCTGATGTCCTTCTTG 12114366 Query 183636 TGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCA 183695 || ||||||||||| || | ||| || | | || | |||||||| || || Sbjct 12114365 TGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTCGGTTGTCAAAATCCTCTCCG 12114306 Query 183696 CCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAA 183755 || | ||||| || || || || | ||| || |||||||| || || ||||| | | Sbjct 12114305 CCGAGGTGTGTGTCCCCGGCTGTGGATTTCACCTCAAATATGCCATCCTCAATGGTCAGG 12114246 Query 183756 ATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || || || ||||| || || ||||| | |||||| Sbjct 12114245 ATGGACACGTCAAAAGTGCCTCCACCAAGATCAAA 12114211 >seq16 Length=24388307 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || | || || || || | || || |||||| Sbjct 2613257 AGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCT 2613198 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| || | ||||| ||||||||||| |||||||||||| Sbjct 2613197 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 2613138 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || ||||| | |||| || || || || || || | ||| Sbjct 2613137 TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 2613078 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| || ||||||||||| Sbjct 2613077 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 350107 GGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTC 350166 ||| || || | || |||||| | ||||| ||||||| | |||| || | || Sbjct 12157576 GGACCTGTTCCGTGCTACAATGAAACCTGTACAAAAAGTCCTGGAAGACTCAGACCTGAA 12157517 Query 350167 CAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCA 350226 || | | ||||| || | || | ||||| || || || ||||| || ||| | || Sbjct 12157516 GAAGCCTGACATTGACGAGATTGTGCTTGTTGGAGGCTCCACTCGTATCCCTAAAATCCA 12157457 Query 350227 ACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGA 350286 ||| | | ||||| || ||||||||||| || || || || ||||| ||||| Sbjct 12157456 GCAGCTGGTGAAGGAGTTCTTCAATGGCAAAGAGCCATCCAGGGGCATCAATCCTGATGA 12157397 Query 350287 AGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 ||||| |||||||| |||||||| ||||| Sbjct 12157396 GGCTGTGGCATATGGAGCTGCTGTCCAGGC 12157367 >seq13 Length=27080333 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 |||||||| || || || || ||||| || || || || || || | || || |||||| Sbjct 11060535 AGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 11060594 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| || | ||||| ||||| || || || || |||||| Sbjct 11060595 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 11060654 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | || ||||| || || || || | || Sbjct 11060655 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTT 11060714 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || ||||| || ||||| Sbjct 11060715 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11060746 >seq18 Length=80077792 Score = 104 bits (114), Expect = 7e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || ||||| || || || | || || ||||| Sbjct 51870061 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCC 51870120 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| || || || || |||||| Sbjct 51870121 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 51870180 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || | || || || || || ||||| | ||| || ||||| || || || | || Sbjct 51870181 TGGAGCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTT 51870240 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 51870241 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51870272 >seq10 Length=29643077 Score = 98.7 bits (108), Expect = 3e-15 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||||| || || || || || || ||||| |||||||| || || ||||||| Sbjct 16873768 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATG 16873709 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||| | || | ||||| || | || || ||||||||||| || ||||| | Sbjct 16873708 CTGGTACCATCTCTGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCCGCAGCCA 16873649 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCA 349758 |||||||||| | || |||| | ||||||| Sbjct 16873648 TTGCATATGGCTTGGACAAAAAG-GTGACCA 16873619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253914645075