Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq25 426 2e-114 seq20 100 3e-16 seq22 93.3 5e-14 seq13 93.3 5e-14 >seq25 Length=32766887 Score = 426 bits (472), Expect = 2e-114 Identities = 1003/1492 (67%), Gaps = 53/1492 (4%) Strand=Plus/Plus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGG 78534 |||||| || ||||| |||| | || |||||| |||| ||| || ||| | Sbjct 10519954 AGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTG 10520013 Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 ||||||||| | ||||||| ||||| | ||||||||| |||| |||||||||||| || Sbjct 10520014 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 10520073 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACC 78654 || || |||||||| || | ||| || |||| | || || | ||||| || Sbjct 10520074 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10520133 Query 78655 TTTAG------GCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGG 78708 || || | |||||||| || ||| || || |||||||||| || ||| Sbjct 10520134 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGG 10520193 Query 78709 ATACCCT--CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766 || |||| | |||| ||||| |||| | |||||||||| | || ||| ||||| Sbjct 10520194 ATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGA 10520251 Query 78767 GTTCGCA---TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGA 78823 | ||||| | ||| |||||| |||||||| | | |||||| || |||||| Sbjct 10520252 GCTCGCAGCTGGCCTC---CAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGA 10520308 Query 78824 GCTCGCGCGCCTTGGTCTCGTCGAACGAAAG---GCCG-AGCATCATGAAGACATCGGCC 78879 || | || | || | | |||||| |||| | || |||||| | |||||| Sbjct 10520309 GCAGCTGAGCTTCGG----GACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10520364 Query 78880 AGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT-GCTCTTTCGGGCCGCCTC 78938 || |||||||||||||| ||||||| | ||||||| |||| | | ||| || || Sbjct 10520365 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCG----GCTTC 10520420 Query 78939 GG---TCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGT 78995 || |||||| |||| ||||||| ||| ||||| | || ||| || Sbjct 10520421 GGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGT 10520480 Query 78996 CACCTCGTACAATTTGGCGAAATCAAAA---TGATTTCCTTTGATGAAAGTCGGTAGGCA 79052 || | || || ||| || ||| | | | ||| | | | ||| Sbjct 10520481 GACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGC 10520540 Query 79053 CAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGT 79112 | || ||||||||||| |||||| ||||||| ||| | ||| | | || || Sbjct 10520541 GATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGT 10520600 Query 79113 GCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGC 79172 ||| | || ||||||||||||| | ||||| ||||||||||||| ||| || || Sbjct 10520601 GCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGC 10520660 Query 79173 GTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCA 79232 |||||||||| |||||| || |||||||| || ||| || || | | ||| ||| Sbjct 10520661 GTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCA 10520720 Query 79233 GATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC--GACGTACGTCCGGTAC 79290 || | | | ||| || ||| | || || |||| | | | || | ||| Sbjct 10520721 GAGCTGCTGCGCCTTCACCACCCT-TTTCACTCTCCCT-TCCTTCTCATATTTGGTGTAG 10520778 Query 79291 AACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATC 79350 | || | ||| |||| || || ||| ||| || || |||||| || |||||| Sbjct 10520779 AGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATC 10520838 Query 79351 AGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410 | | |||||||| || |||| || ||| |||||| ||||| |||||||||| ||| Sbjct 10520839 AAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10520898 Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 ||| ||||| | | | | |||||| | || |||| |||||| || ||| Sbjct 10520899 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 10520958 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 || | | |||| |||||| ||||||||||| |||||||| | || | |||| | Sbjct 10520959 TCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTG 10521018 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 |||||||||| |||||||| || ||||||||| |||||| ||||| ||||| | ||| Sbjct 10521019 CCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCG 10521078 Query 79591 TCGGCGACGCCGTTCGTCCCGTTGAT-TCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 | || | |||||| || || ||| | | | ||| ||| || ||| | || | Sbjct 10521079 TTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCG-TCGATCGGATG-CAGCTCACCG 10521136 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 | ||||| || || | ||||||| ||| ||||||||| ||| || || ||||||| Sbjct 10521137 CCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGA 10521196 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||| ||||| |||||||||||| |||| ||||||||| || |||| ||| || || Sbjct 10521197 TGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGT 10521256 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 | || |||||||||||||||||||| | ||||| ||||| |||| | || || | Sbjct 10521257 TGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGT 10521316 Query 79829 CGTACGTCTCCTTGACGCGCGG----GAGGTCGTCG-CCGTGGATGCCGACCGCGACGCG 79883 ||| ||||| |||| |||| || ||| ||| |||||||| || |||| || | Sbjct 10521317 TGTAGGTCTC---GACG-GCGGCGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCT 10521371 Query 79884 CATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGGTAGCCCTTCTGCAGG 79935 ||||| | || ||| || |||| | || ||| || | |||| ||||| Sbjct 10521372 CATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGG 10521423 Score = 347 bits (384), Expect = 1e-90 Identities = 915/1385 (66%), Gaps = 25/1385 (2%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGG-CGACGACCTCCCGCGAGT 19161 || ||| || | ||||| | || |||| || ||||| || ||| ||| || || Sbjct 10521389 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA-GACATCGA-CGCCG 10521332 Query 19162 CCG-CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTT 19220 ||| |||||| ||| |||| || |||||| ||||| ||||| | |||||||| | Sbjct 10521331 CCGTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCT 10521272 Query 19221 TCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 |||||||||| || ||| |||||| |||| || || ||||| | || |||||||| | Sbjct 10521271 TCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACG 10521212 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 ||||||| || ||||||||||| || || ||| ||||||||| ||| ||||||| | | Sbjct 10521211 ACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTG 10521152 Query 19341 GGGGTATCGG-GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 | || ||||| | | || | ||||| |||| || | ||| || || Sbjct 10521151 GCGGGATCGGCGTGGCGGTGAGC-TGCATCCGATCGACGGGAAGCTACATCGCAGGCACC 10521093 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| || |||| | || || ||||| | || | ||||||||| || ||||| Sbjct 10521092 AACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTAC 10521033 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 || ||||||| ||| ||| | || | |||||||| || || |||||||||||| Sbjct 10521032 GTTGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTATCTGGAGCCATGGCAC 10520973 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 ||||| | || ||||| || ||| |||| || | |||||| | | Sbjct 10520972 TTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCC 10520913 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 | ||||| ||| ||||||||||| || ||||| |||||| ||| || |||| || Sbjct 10520912 AGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAAC 10520853 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAG 19699 | || ||| | ||||||| || ||| || ||||| || ||| || || ||| Sbjct 10520852 CAGGACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAG 10520793 Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGG 19759 | |||| | || | ||| | || | | || | | || | |||||| | Sbjct 10520792 GAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGTGAAAAGGGTGGTGAAG 10520733 Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819 || | | | ||||| || | || || | |||| ||| ||||| || || |||||| Sbjct 10520732 GCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATG 10520673 Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879 |||||||||||| ||| ||| || ||| ||||| | ||| | ||||||| Sbjct 10520672 CTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGC 10520613 Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939 |||||| || || || | ||||| ||| ||||||| ||||| || || Sbjct 10520612 AGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAAC 10520553 Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAG-----GCCTCCTCCTTCGACTTTGCCA 19994 ||||| ||| | ||| | | ||||| | || || |||||||| | Sbjct 10520552 CTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAGCGGACT--TTCGACTTCAAGA 10520495 Query 19995 AATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACT 20054 | || | || ||| ||| || | || || || ||||||| |||| Sbjct 10520494 AGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAACT 10520435 Query 20055 TTTACCCG---ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCG 20111 |||||| |||| || | | | || || | ||||||| ||||||||| ||||| Sbjct 10520434 ACTACCCGGTTCCCGAAGCCGAG---ACTTCCAACAAGCGCCACAGGCCGATCGGGATCG 10520378 Query 20112 GCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGG 20171 |||||||||| |||||||||| ||||| || | | | | | ||||| |||| | | Sbjct 10520377 GCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACCCTTTCGAAAGTCCCGAAG 10520318 Query 20172 CGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGT 20231 | | |||||||| || |||||| || | |||||||| ||||| || | Sbjct 10520317 CTCAGCTGCTCAACATCCAGATGTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCT 10520258 Query 20232 GCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGG 20291 |||| |||||| |||| |||||| |||||||||| | |||| ||||||| | ||| Sbjct 10520257 GCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGG 10520198 Query 20292 GTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC-----GC-CC 20345 | ||||||||| |||||||||| || || || ||||| | || | Sbjct 10520197 GCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGACCTTTGGGACTGGAAGCTGC 10520138 Query 20346 TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGA 20405 | |||| ||||| | ||||| | | ||| |||| | ||||||||||| | Sbjct 10520137 TGAAGGAAAAGATCGGCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCA 10520078 Query 20406 CCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACA 20465 | || || |||||||||||| |||| ||||||||| | ||||| ||||||| | ||||| Sbjct 10520077 CGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACA 10520018 Query 20466 TCTAC 20470 ||||| Sbjct 10520017 TCTAC 10520013 >seq20 Length=26302745 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| | ||||||||| ||||| || || |||||||| ||||| ||| |||||| Sbjct 12394199 CGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCTATC 12394140 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||||| || ||| | ||||||||||| ||||| | | ||||||||| || ||| | Sbjct 12394139 TACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGC 12394080 Query 60102 CGGGACGAGG 60111 |||| |||| Sbjct 12394079 AGGGATGAGG 12394070 >seq22 Length=23629796 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| |||||| | || |||||||| || ||| | ||| Sbjct 3940873 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGGC 3940932 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||||| ||| ||||||||| || ||| ||||||| Sbjct 3940933 CTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 3940981 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 3941738 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3941797 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 3941798 CGGGTCGGGGAGTA 3941811 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 3948843 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3948784 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 3948783 CGGGTCGGGGAGTA 3948770 >seq13 Length=27080333 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||| | ||| |||||||||||||| | || | ||||||| ||||| | Sbjct 15278744 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 15278803 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||||||||| || ||||| Sbjct 15278804 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTC 15278844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524628586000