Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25 197 2e-45 seq2 89.7 6e-13 seq22 87.8 2e-12 seq20 82.4 8e-11 >seq25 Length=32766887 Score = 197 bits (218), Expect = 2e-45 Identities = 470/700 (67%), Gaps = 8/700 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| |||||||| || || || | || ||| || Sbjct 10521302 AAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTG 10521243 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || ||||||||| | || |||||||| ||| ||||| ||||||||||| || || Sbjct 10521242 TCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTG 10521183 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACTGCTCGAACGT 53445 ||| |||| || | ||| ||||||| | || || ||||| | | || | | | Sbjct 10521182 AAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGC-TGCAT 10521124 Query 53446 CCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| || |||| | | | ||| || || |||||| | || | || | ||||| | Sbjct 10521123 CCGATCG-ACGGGAAGCTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGA 10521065 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| | || | ||||||||| || |||||||| ||||||| || ||| | | Sbjct 10521064 TGCTGAGAGTTTACAACAACACCGCTCGGTACGTTGACCAGGGCGGCAACAAGAGACCCG 10521005 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || | |||||||| || || ||||| |||||| |||| | | || || || |||||| Sbjct 10521004 GGGCCTTCGCCATGTATCTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGA 10520945 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || ||| || ||||||| Sbjct 10520944 AGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTAC-GCCTTGTGGATC 10520886 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | | ||||||| || |||| |||| | ||||||| || | | Sbjct 10520885 CCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGC 10520826 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 ||||| || || || | | ||| || || |||||||| | || | || | || Sbjct 10520825 GAGTGTCCTGGGCTGGACGAGTG-CTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATA 10520767 Query 53803 CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCT 53862 | | || | || | | ||| ||||||| || | ||| | || ||| | Sbjct 10520766 TGAGAAGGAAGGGAGAGTGAAAAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCAT 10520707 Query 53863 CAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAA 53922 | || |||| || || || || || |||||| ||||||||| | |||| ||| Sbjct 10520706 CGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACAGGAA 10520647 Query 53923 GAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||| ||||| | ||| |||||| | |||||| Sbjct 10520646 GAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 10520607 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 10520100 CCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 10520041 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || || | || ||||| || Sbjct 10520040 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 10519981 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAA 55671 ||||| |||||| ||||||| ||| | || | | ||||||| | |||| || Sbjct 10519980 CGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAA 10519921 Query 55672 GA 55673 || Sbjct 10519920 GA 10519919 >seq2 Length=25664663 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || ||||| |||||||||||| Sbjct 3547535 GTGAAGATGTATCGAGGGCTGGCTGAGTCCTTGCCGCCGTGCAGCCTGGTTCCAAACTGT 3547594 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| || Sbjct 3547595 CCCAGA-GGCTGCAGCAGGTTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAACCGAC 3547653 Query 152148 AATCGT 152153 ||||| Sbjct 3547654 GATCGT 3547659 >seq22 Length=23629796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 3941811 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3941752 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 3941751 AAGTCGAACGGGTTCT 3941736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 3948770 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3948829 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 3948830 AAGTCGAACGGGTTCT 3948845 >seq20 Length=26302745 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| || ||||| ||| | || ||||| || || Sbjct 22861966 GTGAAGATGTAACGGGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCAAACTGA 22861907 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || || ||||| || Sbjct 22861906 CCCAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCACG 22861847 Query 117425 ATCGT 117429 || || Sbjct 22861846 ATGGT 22861842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215828995000