Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25 244 1e-59 seq13 149 7e-31 seq20 82.4 9e-11 >seq25 Length=32766887 Score = 244 bits (270), Expect = 1e-59 Identities = 844/1292 (65%), Gaps = 51/1292 (4%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| |||||| ||||| Sbjct 10520026 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 10520085 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAATCT 80511 || | | || ||| |||| || |||||| || ||| | ||| ||| | Sbjct 10520086 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTC 10520145 Query 80512 GA---CCAAAAATCAACCCCAACGCTGTGACCCCACATGTCGTGCTGCAAGATGCCCT-- 80566 | ||||| || | || | | |||||||||||| ||| | |||||||| Sbjct 10520146 CAGTCCCAAAGGTCGGTCGG--CG-TCTTCTCCCACATGTCGTACTGGAGGATGCCCTTG 10520202 Query 80567 CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT-GGCCAGCTCACAC 80625 | |||| || || ||| || |||||||||| ||||| | ||| ||| ||||| || Sbjct 10520203 CTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGC-TCTGCGGCGAGCTCGCAG 10520259 Query 80626 ---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 | ||||| |||| ||||| || ||| ||| || | |||| | | || Sbjct 10520260 CTGGCCTCCA---GGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAG-CAGCTG 10520315 Query 80683 GCCTGTGGGTCGT-CGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAAC 80741 || ||| | | |||| | | ||||| ||||| |||| ||||| ||||| || Sbjct 10520316 AGCTTCGGGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGAC 10520375 Query 80742 GCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAA 80801 |||||| ||||||| | |||||||||||| || |||||| || |||| ||||| | Sbjct 10520376 GCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTA 10520435 Query 80802 GTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAAC--CCGTG-TAACATCATGAAG 80858 ||| | ||||||| ||| ||||| | | || | || || | || || Sbjct 10520436 GTTGATGTCGATGATCTTGTTGAGGTT---TTTCACGATTACCTTGGTGACGGAGGCCAG 10520492 Query 80859 TTTCTGAAAGTCGAA--TTGGTTCCC-CTTCAC--AAATGCCGGAAGGCTCAGGGACGCC 80913 |||| |||||||| | | || | | || | ||| | ||| | ||| ||| Sbjct 10520493 CTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTG--AGGGCGATGGAGGCC 10520550 Query 80914 AGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGCACAAAT 80971 || ||||| ||||||||||| || || |||| ||| || | |||||||| | | Sbjct 10520551 AGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTA--CTCCACCACCTCCGTGCAGAGGT 10520608 Query 80972 TAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGT 81031 | |||| || || |||||||| | |||||| ||| ||||||||||||||||| Sbjct 10520609 TGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGT 10520668 Query 81032 AGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGC 81091 || |||||| ||||| ||||| ||| ||| |||| || |||||||| ||| | || Sbjct 10520669 AGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCT 10520728 Query 81092 GCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCG 81150 ||||||| |||||| | | | | ||||| | |||| |||| ||| |||||| ||| Sbjct 10520729 GCGCCTTCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTC-TCG 10520787 Query 81151 AACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAG 81210 |||| | || || || | || |||||| | || ||||||| | |||| Sbjct 10520788 AACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAG 10520847 Query 81211 TCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGG 81270 || || | |||| || ||||||||| |||||||||||| | |||| ||| ||| Sbjct 10520848 TCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGG 10520907 Query 81271 TCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATG 81330 || | | | | |||||| | || ||| || ||| || ||||| | | | Sbjct 10520908 TCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACG 10520967 Query 81331 TCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC------CTTGCGACGGCCACCC 81384 || ||||||||||||||||||| ||||| | ||| |||| ||| ||| Sbjct 10520968 TCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTG---TTGCCGCCC 10521024 Query 81385 TGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGAC 81444 |||| ||||| || || || ||| | || | || ||| || | | || | || Sbjct 10521025 TGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAG 10521084 Query 81445 TGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCG 81504 | ||||| || || |||| ||| | | || | ||| | | | ||| Sbjct 10521085 TTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCG 10521144 Query 81505 ATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCG 81564 || || || | |||| ||||| | || ||| | |||| ||| || || || || ||| Sbjct 10521145 ATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCG 10521204 Query 81565 ATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCG 81624 ||||| || | |||||| | |||| ||| || || |||| ||| || | || | ||| Sbjct 10521205 ATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCG 10521264 Query 81625 GCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 || ||||| || || || | ||||| |||| Sbjct 10521265 GCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAA 10521296 >seq13 Length=27080333 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || |||||||| || || || || ||||| || | | Sbjct 11060746 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 11060687 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| |||||||| || || || |||||| Sbjct 11060686 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 11060627 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| || Sbjct 11060626 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 11060567 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || |||||||| || || || || | ||||| | ||||| || Sbjct 11060566 ATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCCA 11060517 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 || || || || ||||| | ||| ||||| || || ||||| |||| |||||| | | Sbjct 15278738 TCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 15278797 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| |||||||||||| ||||||||| ||||| ||||| ||| |||| | Sbjct 15278798 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCG 15278857 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 15278858 ATGATGGCGTACCAGAGCTGCTGAGCCTTCACCAC 15278892 >seq20 Length=26302745 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| || ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 22861842 ACCATCGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCC- 22861900 Query 32185 TCT-GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||| || |||||||| || || || || ||||| || ||||| ||| |||||||||| Sbjct 22861901 TCTGGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGACGCTGCCAGCCCCCGTTACAT 22861960 Query 32244 CTTCACC 32250 ||||||| Sbjct 22861961 CTTCACC 22861967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310221778000