Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028697.1 Length=33900 Score E Sequences producing significant alignments: (Bits) Value seq18 176 1e-39 >seq18 Length=80077792 Score = 176 bits (194), Expect = 1e-39 Identities = 285/406 (70%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 11963 AATGAAAGACAGAGGCGCTTTGCAGATGAGTACATAAAGACAGGAAATGGTTATCAATCA 12022 ||| ||||||| | | ||||| ||||| | | |||||| |||| |||||||| Sbjct 30100558 AATCAAAGACAAAAGATGTTTGCGAGCGAGTATTTGAGGACAGGCAATGTCTATCAATCT 30100499 Query 12023 GCAATTAAAGCTGGTTATAGTGAGAATTATGCC--AATAATCGTATTACTGAATTGTTGG 12080 ||||| || |||||||||||| ||| ||| || || || || | |||| | | Sbjct 30100498 GCAATATTTGCCGGTTATAGTGAGGCTTACGCCAGAACAACCG--CTAGTAAATTACTAG 30100441 Query 12081 GAAATGTTGGGATAAAAGAGTATATCAATAAACAGATGC--AAGAGTTGCATAAGTCAAA 12138 ||||| | || ||| || || | ||||||| | || || |||| | || Sbjct 30100440 AAAATGCAAGCATTAAAACGTTCAT--ACAAACAGAAACCAAAAAGATGCACGATGAGAA 30100383 Query 12139 CATTATGGATGCCACAGAGGCTCTTTCTATCCTTTCTGAAATTGCTAGAGGTAAAAGAGA 12198 |||| || ||||| |||||| ||||| || ||||| || ||||| ||||| || || Sbjct 30100382 CATTTTGAGTGCCAAAGAGGCCCTTTCAATTCTTTCAGACATTGCAAGAGGAAAGCGACT 30100323 Query 12199 TGAGGAAGTGTTGATACTTAATCCGACAACAGGAAAAGTTGAAAGACACACAAAGAAAGC 12258 ||| ||||| ||||| | |||||| ||| || | || || ||| || || || || Sbjct 30100322 TGAAGAAGTTTTGATGATGAATCCGGTAACTGGTGAGGTGGACAGAGTTACGAAAAAGGC 30100263 Query 12259 TGATAATGCAACGGTTATTAAAGCTATTACTGAAATCTTAAAACGCTACCCAACAGCTAA 12318 |||||| || ||||| ||||| || ||||||| || ||||| || || || ||||| Sbjct 30100262 GGATAATAACACAGTTATCAAAGCGATAGCTGAAATATTGAAACGATATCCGACTGCTAA 30100203 Query 12319 ACAGTCTGAAAAACTAGAACTTGAGATTGAGAAATTAAAATCACAA 12364 ||| |||||||||| || ||||| || |||||| | ||||| ||| Sbjct 30100202 ACAAGCTGAAAAACTTGAGCTTGAAATAGAGAAACTTAAATCTCAA 30100157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108358367831100