Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028700.1 Length=37976 Score E Sequences producing significant alignments: (Bits) Value seq18 145 2e-30 >seq18 Length=80077792 Score = 145 bits (160), Expect = 2e-30 Identities = 185/250 (74%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 9218 GGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAA--GTAGCTGTAGCTA 9275 || || |||||| ||||| ||| | || ||||| | |||| ||||| || || | Sbjct 59386137 GGGCGTATGACCCGTGACGCTGAGTTGCGTTATACCCCA--TCAAATGTAGCAGTTGCGA 59386080 Query 9276 CGTTCACACTTGCGGTAAACCGCAGATTTAAAGAG-CAAAACGGGGAGAGAGAAGCAGAT 9334 | || || ||||| |||||||| | ||||| ||| ||||| || || | || || ||| Sbjct 59386079 CTTTTACTCTTGCAGTAAACCGTACGTTTAA-GAGTCAAAATGGCGAACGTGAGGCTGAT 59386021 Query 9335 TTCATTAATTGTGTTATCTGGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAA 9394 || || ||| || || ||||| || ||||||||| | || ||||||||||||||| Sbjct 59386020 TTTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAA 59385961 Query 9395 GGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGTAACTACGAAAACCAACAAGGA 9454 || || | ||||| | || || ||||| ||||| |||| ||||| ||||| |||||| Sbjct 59385960 GGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTACGATAACCAGCAAGGA 59385901 Query 9455 CAACGTGTCT 9464 |||||||||| Sbjct 59385900 CAACGTGTCT 59385891 Score = 98.7 bits (108), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 6/134 (4%) Strand=Plus/Minus Query 1117 TAAGCAGTTTCACCATTTTCCTTTTTATATGATTTAATTTTCATTGCAT---ACCATCTT 1173 ||||| || || || |||| |||||| || || | ||||||||||| | ||| || Sbjct 30117746 TAAGCTGTATCTCCGTTTTTCTTTTTGTAAGACTCAATTTTCATTGATTTTTACCTCATT 30117687 Query 1174 TCAATTTGATAAAATAGGTACAAGAAAATGACCTTTTTAATGGTTGTTTCTTATACTGTC 1233 || |||||||||| |||| || ||| ||||||||||||||||||||||||||||| Sbjct 30117686 TC---TTGATAAAATGGGTATAAAAAAGCGACCTTTTTAATGGTTGTTTCTTATACTGGA 30117630 Query 1234 TTGCCTCACGCTCA 1247 | ||||| |||| Sbjct 30117629 TATCCTCATACTCA 30117616 Score = 86.0 bits (94), Expect = 2e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 139 GTGATGTGAGTATATACGTTCATAGTTGTCTGTAAATCTCCATGCCCTAATCTATGTTGC 198 |||||||||||||| |||||||| || || | | ||| ||||| | ||||| || Sbjct 30118730 GTGATGTGAGTATAAACGTTCATGGTCGTTTTAAGGTCTGAGTGCCCAAGTCTATACTGG 30118671 Query 199 ACCTGTTTCAAGGATAGACCTGATTCGAAAAGTAAGCTTGCATGAGTGTGCCTGAAACCA 258 || |||||||||| | |||| || ||| || ||| ||||| || |||||||| || Sbjct 30118670 ACTTGTTTCAAGGTCATGCCTGCATCAAAACATAGGCTGGCATGTGTATGCCTGAATCCG 30118611 Query 259 TGAATTGTGATTTGTGGTAAGTCTGTCCCTTTGATAATTTGCAATAGCCATTTTCGTGGT 318 || ||| | ||| || ||| || | |||| | ||| | | |||||||| ||| Sbjct 30118610 TGGATTTTAATTGGTCGTAGATCGCTATCTTTCAAAATGGTAAGCAACCATTTTCTCGGT 30118551 Query 319 AAACT 323 | ||| Sbjct 30118550 AGACT 30118546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121401563958900