Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq18 145 3e-30 >seq18 Length=80077792 Score = 145 bits (160), Expect = 3e-30 Identities = 224/318 (70%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 54933 TGACGCACTCGCCGAAATGGCGCGAACAGCTCGGAACACTCGGCGGCGGCAACCATTTCA 54992 || |||| |||||||| ||||| | ||| | || | | || || || |||||||||| Sbjct 70158310 TGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCA 70158251 Query 54993 TTGAACTGTGCCTCGACCAGCTCGACCGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTG 55052 ||||| |||| | ||| ||| |||||||| ||| |||||||||| ||||| || || | Sbjct 70158250 TTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTGCACTCCGGTTCCCGCG 70158191 Query 55053 GTGTCGGCAACAAGATCGCGCAGAAACACATCAAGGCCGCCCAGAACGCCTGCGAGGGCA 55112 |||| ||||||||||| || |||| ||||| ||| |||||| || ||| | | ||| Sbjct 70158190 GTGTGGGCAACAAGATTGCAAAGAAGCACATTAAGATTGCCCAG--CGTCTGTGTGAGCA 70158133 Query 55113 ----TCGA----ACTGCCGTCCAAGGATCTGGCGTACCTCACCGAAGGCACACCCCAATT 55164 | || ||||| ||||||| |||||||| | | || || || | || Sbjct 70158132 GTGGTGGATTCCCCTGCCCAACAAGGATTTGGCGTACTTGGTGCAGGGGACCCCAGAGTT 70158073 Query 55165 CTACGAGTACCTACGTGAACTGCATTGGGCGCAACGATTCGCGTACTCGAACCGCGCCGA 55224 | | | || || | || || | |||||||| || || || | | ||||| | || Sbjct 70158072 CAAGGCTTATCTGCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGTGAGGA 70158013 Query 55225 AATGATGGACCGGTTCGC 55242 |||||||||||| ||||| Sbjct 70158012 AATGATGGACCGTTTCGC 70157995 Score = 87.8 bits (96), Expect = 7e-13 Identities = 61/68 (90%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 786 CATATGCGGGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTC 845 |||| | | ||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 68267902 CATAGGGGCGTAGCTCAATT-GGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTC 68267960 Query 846 GAGTCCTG 853 ||||||| Sbjct 68267961 AAGTCCTG 68267968 Score = 84.2 bits (92), Expect = 9e-12 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 54594 TGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGCAAAGGCAGCT 54653 ||||||| | || ||||| || || |||||||||||||| || ||| ||| | Sbjct 74070677 TGCCGTTTATTTACCCGCATGTTGCGCTCATGCCCGACGCCCACACCGGGTTAGGGTCGT 74070736 Query 54654 CGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTCGGCGTCGACA 54713 |||| || || || || |||| | ||||| || || |||||||| ||||| |||| Sbjct 74070737 CGGTGGGAACCGTGTTCGGCACCATTGATGCCGTGATTCCCGCCGCCGTGGGCGTTGACA 74070796 Query 54714 TCGGCTGCGGCATGATCGC 54732 |||| ||||||||||| || Sbjct 74070797 TCGGATGCGGCATGATTGC 74070815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196713541600650