Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028859.1 Length=42881 Score E Sequences producing significant alignments: (Bits) Value seq18 105 2e-18 >seq18 Length=80077792 Score = 105 bits (116), Expect = 2e-18 Identities = 385/595 (65%), Gaps = 26/595 (4%) Strand=Plus/Minus Query 17832 CGTGGTATGACATCGTTTGGTGCATATATCAATGAAGCGTCGTTAGCGCATGAAGAGGTG 17891 |||||| | ||| | ||||| || ||| | || || || ||||| || ||||| | ||| Sbjct 30099735 CGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCGTTGGCCAATGAACAAGTG 30099676 Query 17892 TTTGACGAGATTAAGTCACGTTGTAGTGGAACTGGTGCAAGAATA--TTGGTAGATACCA 17949 || | || || | ||||||||| ||| |||||| | || |||| |||| | Sbjct 30099675 TTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGGATTGTTTGG--GATAGTA 30099618 Query 17950 ACCCTGACCATCCCGAGC-ATTGGTTGTTGAAAGATTATATTGAAAATACAGATCCTAA- 18007 |||| ||| ||||||| | | ||| | |||||||| | | || || Sbjct 30099617 ACCCAGAC-ATCCCGACCCACTGGCTCAGACGGGATTATATCAACTCTGGCGACGATATG 30099559 Query 18008 AGCAGGTATACTGAGTCACCAATTTAAGCTCGATGACAATAACTTTCTTAATGATAGATA 18067 | || || ||| || || ||||| ||||| |||| || | ||| ||||| Sbjct 30099558 ATCA--TAGACTTT-----CATTTCAAGCTAGATGATAATACATTCATGTCTGACAGATA 30099506 Query 18068 TAAAGAGTCTATTAAGGCTTCAACACCATCAGGTATGTTCTATGAACGTAACATCAACGG 18127 || ||| ||| | | |||||| | ||| | || ||||| || ||||| || Sbjct 30099505 CCGCGAAAATATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAGACATCCTTGG 30099446 Query 18128 TATGTGGGTGTCTGGTGACGGTGTAGTATATGCCGACTTTGATTTGAATGAGAATACGAT 18187 | |||||| | ||||||| || || |||||| || |||||| | ||||||| | | Sbjct 30099445 TTTGTGGGCGACTGGTGAGGGCGTTGTATAT--CG----TGATTTTAGCGAGAATATGTT 30099392 Query 18188 TAAAGCAGATGAACTGGACGACATACCTATCAAAGAATACTTTGCTGGTGTCGACTGGGG 18247 | | | | || || || ||| ||| || || ||||||||| |||||||| Sbjct 30099391 TGTGGATAACGTACCAGAAGATATAACTA------AAGTCTATGCTGGTGTTGACTGGGG 30099338 Query 18248 TTACGAGCACTATGGATCTATTGTGTTAATAGGACGAGGTATAGATGGTAACTTTTATTT 18307 || || |||| ||| |||||||| | | ||| | ||| ||| ||||| | Sbjct 30099337 GTATGAACACTTTGGCTCTATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTTTATAT 30099278 Query 18308 TATTGAGGAGCACGCACACCAATTTAAGTTTATTGATGATTGGGTGGTTATTGCAAAAGA 18367 | ||||| ||||| || |||| || ||||| |||||| | |||| ||||| Sbjct 30099277 CTTAGAGGAACACGCTCATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCTAAAGA 30099218 Query 18368 TATTGTATGTAGATATGGCAATATTAATTTTTACTGCGATACTGCACGACCTGAA 18422 || | ||||||||||||||| |||| |||| |||||||||||| Sbjct 30099217 AATCAAAAAACGATATGGCAATATTACGTTTTGGGCAGATAGCGCACGACCTGAA 30099163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137097559299150