Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028869.1 Length=153714 Score E Sequences producing significant alignments: (Bits) Value seq18 172 5e-38 >seq18 Length=80077792 Score = 172 bits (190), Expect = 5e-38 Identities = 552/842 (66%), Gaps = 26/842 (3%) Strand=Plus/Plus Query 48726 AGTCGATGATCGGCCCGATCCAGCTCCAGCTGCGTTACCAGGGCATCCTGCGTAACGTCC 48785 |||| ||||| || || |||||||| |||||||||| ||||| || |||| ||||| | Sbjct 39945127 AGTCCATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAACGTTC 39945186 Query 48786 TGCTGGAGGACACGCTGACCCCCGGCGTGCCGATCCAGTACGACGTGCTGGACGACCTGG 48845 | |||| || | || || || || ||| | ||||||||||| || ||| | || Sbjct 39945187 TTTTGGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAGTGGG 39945246 Query 48846 GCCAGGCCTACATGCTGCACGGCAATGAGGGCGAGATCCGCATCACCCCCTTCGAGGGCA 48905 ||||||| || || ||||| || ||| || || | ||| || |||| | Sbjct 39945247 GCCAGGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAGGCAA 39945306 Query 48906 AGCGTATCGAGGTCCAGCTGTTCCGCATCGCGAGCTTCCCGCAGATCAAGAAGGAAGACC 48965 ||||| | |||| | ||||||||||| || |||||| || || || || || Sbjct 39945307 AGCGTGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAGGATG 39945366 Query 48966 TGT--ACTACCTCCGCAGCAACATCGTGGAGTACACGCAGGACATGACCAAGCAGGCCAT 49023 | | | || |||| || | || ||||| | ||||| | | || | || || Sbjct 39945367 TTTGGATGGCCCGCGCA--AATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAGCTAT 39945424 Query 49024 CATGCGCCAGGAGGACTCGCGCCTCGTGACGCTGCTAGAAGCTGCAGCGGTCTCCTACCG 49083 ||| | ||| |||||||| || || || ||| | |||| ||| | || | Sbjct 39945425 TATGAAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTA---TTTCGCAGTT 39945481 Query 49084 CGTCGTGGACAGCTCGGCTCAGC-CGGGC-GTCGGCGCACTGCCCAACGAGATCACCATC 49141 | | ||| | ||| | || || | | || || |||| ||||| || |||||| Sbjct 39945482 CCAGGCTAACAACCCGGAT--GCTCGTACTGGTGGTGCTTTGCCGAACGAAATTACCATC 39945539 Query 49142 GCAGGCTCGCACCTGATGCCCGAT---GATCTCTACACGGCGGTGACCTACACCG---AC 49195 || || || || ||| | ||||| || | || || | || ||| || Sbjct 39945540 GCT---TCCGACTACATTACCGCTAACGATCTGTATTCCGCTGTTTC-TATCCCGGATAC 39945595 Query 49196 CAGCGTCAGCTGGACAGCTCGCGCCTGCTGGCGAACCCGCAGGAGTACCGCGACCTGTAC 49255 | ||||||||||| || ||| | ||| || | | || ||||| ||| | ||| Sbjct 39945596 C--CGTCAGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTTCTAC 39945653 Query 49256 CGGTGGGACATCAACACGACCGGTTGGGCCTTCAAGGACTCGGTGGTCGCTGGCGAGCGC 49315 || ||||| |||||| || |||||||| ||||| || || || ||||| || Sbjct 39945654 CGCTGGGAAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGAAACT 39945713 Query 49316 ATCGTCCAGTTCGGCGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCACCGT 49374 ||| | ||||| || |||||||| || || || |||| ||| ||| ||||| | Sbjct 39945714 ATCACCACTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCACAAT 39945772 Query 49375 CTACCTGACCCCGGAGCCCGAGTTCCTCGGCGTCTTCCCGGTCATGTACTCCCTCGATGT 49434 || || || || | || || ||||| || || | || || |||||||| || ||||| Sbjct 39945773 GTATCTTACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGGATGT 39945832 Query 49435 CGAGGAGGACAACAAGGTGGAGCGGTTCAACAAGGGCTGGGTCATGGACGAGCTGGTCGG 49494 ||||| |||||||||| || ||| | | || ||||| ||||| || || |||| Sbjct 39945833 GGAGGAAAACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTATCGG 39945892 Query 49495 CATGGCCATTCTCAACCCAAGGGGCATCGTGATTTTGCGTAAG-GCTTGATCCGTATAAC 49553 |||||| ||||||||| | || || ||| | |||||||| ||| | | |||||| Sbjct 39945893 CATGGCTATTCTCAACGCCGCTGGTATTGTGGCTCTGCGTAAGAGCTAGTTAGTTATAAC 39945952 Query 49554 CA 49555 || Sbjct 39945953 CA 39945954 Score = 105 bits (116), Expect = 7e-18 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 43572 GGGCCATCTCGGCGCGAGTTAACCAGAACTACGATGGTTGGCCATCAGACGAGCTGAAGA 43631 |||| || || | ||||| |||||||||| |||| ||||| || || || || | Sbjct 39942173 GGGCTATTTCTTCCCGAGTGAACCAGAACTTTGATGCGTGGCCGTCTAGTGAACTTAAAA 39942232 Query 43632 AGGCCGCGCACACCTTCATCGGAAAGCCGGTCTTCGTCAACCACGAGAACTACGACCCTA 43691 |||| | ||||| | || ||||| || ||||| ||||| | || | ||||| | Sbjct 39942233 AGGCTTACAAAACCTTTTTAGGCAAGCCTGTTTTCGTTAACCATGTTAATGATGACCCCA 39942292 Query 43692 AGAAGGCCCGGGGAGTTGTTGTCGCGGCTCGGTACGTCGAGAACGGCAATGACAAGTTCA 43751 ||| ||||| || |||||||| || ||| | || || |||| || || |||| || Sbjct 39942293 CGAAAGCCCGTGGCGTTGTTGTTGCTTGTCGTTTTGTTGAAGACGGTAAAGATAAGTACA 39942352 Query 43752 TCGAGGTCATTCAGGAAATCGACGCCAAGCGTTTCCCAAAGCTGGCCCACGAGATCCGCA 43811 |||| |||||||||||| |||| || || ||||| ||| || | || || Sbjct 39942353 TCGAAGTCATTCAGGAAGTCGATGCAGAGAAATTCCCTTTGCTTGCAAAAGAACTCATTG 39942412 Query 43812 CCGGCGGACTTGACTCTGTGTCGATGGG 43839 || ||| | |||||||| || ||||| Sbjct 39942413 AAGGTGGATTAGACTCTGTTTCTATGGG 39942440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491756646326000