Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq18 89.7 5e-13 >seq18 Length=80077792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 27083 ACGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGA 27142 ||||| ||||||||||| |||||||||||| ||| ||||| ||||||||| |||||||| Sbjct 59726947 ACGCCGCCTTAGCTCAGTCGGTAGAGCGATTCACTCGTAATGAATAGGTCGGGGGTTCGA 59727006 Query 27143 ATCCTACAGTCGGCACCATAACATGGGG 27170 ||| ||| |||| || ||| ||||| Sbjct 59727007 TTCCCCCAGGCGGCTCC--AACGTGGGG 59727032 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/100 (82%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 27772 TAAGTTAATTGGAAGGGTACTCAAGTGGATAAAAGAGGGCGGTCTTGAAAAC-CGCTAGG 27830 ||||| |||||||| |||||||| || | || |||| || | ||| |||| || |||| Sbjct 62904360 TAAGT--ATTGGAAGATTACTCAAGAGGCTTAA-GAGGCCG-TGTTGGAAACGCGGTAGG 62904305 Query 27831 CGTGTAAAAGCGTGCGTGGGTTCGAATCCCACTCCTTCCG 27870 ||||||| ||||||||||||||||||||||| |||||| Sbjct 62904304 CGTGTAACAGCGTGCGTGGGTTCGAATCCCATGTCTTCCG 62904265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519827037554000