Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq18 109 2e-19 >seq18 Length=80077792 Score = 109 bits (120), Expect = 2e-19 Identities = 201/294 (68%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 38104 AAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGG 38163 ||| | || || |||||||| ||||| |||||||| ||||| |||||||| |||| Sbjct 73247059 AAGGTGACAAATTCCTTGGCTAGCACTTCGGGCTTTTTCTTACCCATGGCTTTGCGGAAT 73247000 Query 38164 AGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGC----CGCCTTCTGCACCTG 38219 ||| || || ||| |||||| ||||| | || | ||| | | ||| Sbjct 73246999 CCGTCTGCTTGTCCGGCGGTGTAGTTGGCCACTTTTTGAGAAATACGCATGAT----CTG 73246944 Query 38220 CTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCAC 38279 ||| ||||| | ||| || || | || ||| || || || ||| || || || | Sbjct 73246943 CTCTTGGTACACGATCAGACCATAAGTTTCGTCGAGAATTTCCCGCAGTGGTTCTTCAAG 73246884 Query 38280 CTCGGGGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTG 38339 ||||||||||| |||||||| || | | | ||| |||||| |||||| | ||| Sbjct 73246883 TTCGGGGTGGATGGGCGTGATTTCTTCGCGGCGGTTTTTGCGGTCGGCGTACGCCCAGTG 73246824 Query 38340 CGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTC 38393 || ||||| ||||| || || || ||||||||||||| |||| |||||| Sbjct 73246823 CGCGCCCACACCCATGGGCCCGGGGCGGTACAGCGCGAGAGCGGCGACGATGTC 73246770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159715152584550