Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028917.1 Length=41931 Score E Sequences producing significant alignments: (Bits) Value seq18 105 2e-18 >seq18 Length=80077792 Score = 105 bits (116), Expect = 2e-18 Identities = 387/598 (65%), Gaps = 26/598 (4%) Strand=Plus/Plus Query 21429 GTATTCAGGTCGTGCAGTATCGCAGTAAAAATTAATATTGCCATATCTACTTACAATATC 21488 || |||||||||||| |||| |||| ||||||||||||||| || || || Sbjct 30099160 GTGTTCAGGTCGTGCGCTATCTGCCCAAAACGTAATATTGCCATATCGTTTTTTGATTTC 30099219 Query 21489 TTTTGCAATAACCACCCAATCATCAATAAACTTAAATTGGTGTGCGTGCTCCTCAATAAA 21548 ||| |||| | |||||| ||||| || |||| || ||||| ||||| | | Sbjct 30099220 TTTAGCAAGGTCTACCCAAAAGTCAATCTCTTTGTATTGATGAGCGTGTTCCTCTAAGAT 30099279 Query 21549 ATAAAAGTTACCATCTATACCTCGTCCTATTAACACAATAGATCCATAGTGCTCGTAACC 21608 ||||| ||| ||| | ||| | | |||||||| ||| |||| || || || Sbjct 30099280 ATAAACTGAACCGTCTGAGGTTTCTCCGACAACTACAATAGAGCCAAAGTGTTCATACCC 30099339 Query 21609 CCAGTCGACACCAGCAAAGTATTCTTTGATAGGTATGTCGTCCAGTTCATCTGCTTTAAT 21668 |||||| ||||||||| || || ||| ||| || || || | | | || Sbjct 30099340 CCAGTCAACACCAGCATAGACTT------TAGTTATATCTTCTGGTACGTTATCCACAAA 30099393 Query 21669 CGTATTCTCATTCAAATCAAAGTCGGCATATACTACACCGTCACCAGACACCCACATACC 21728 | ||||||| | |||||| || |||||| || || ||||||| | |||||| ||| Sbjct 30099394 CATATTCTCGCTAAAATCA----CG--ATATACAACGCCCTCACCAGTCGCCCACAAACC 30099447 Query 21729 GTTGATATTACGTTCATAGAACATACCTGATGGTGTTGAAGCCTTAATAGACTCTTTATA 21788 ||| | || ||||| || | ||| | |||||| | | ||| ||| || || Sbjct 30099448 AAGGATGTCTCGGTCATAAAATACACCAGCTGGTGTGGCATTCTTGATATTTTCGCGGTA 30099507 Query 21789 TCTATCATTAAGAAAGTTATTGTCATCGAGCTTAAATTGGTGACTCAGTATACCTGCT-T 21847 ||| ||| | || |||| ||||| ||||| || || ||| || || | Sbjct 30099508 TCTGTCAGACATGAATGTATTATCATCTAGCTTGAAATG-----AAAGTCTA--TGATCA 30099560 Query 21848 TAGGATCTGTATTTTCAATATAATCTTTCAACAACCAAT-GCTCGGGATGGTCAGGGTTG 21906 || || | | |||||||| | ||| | | ||||||| ||| ||||| Sbjct 30099561 TATCGTCGCCAGAGTTGATATAATCCCGTCTGAGCCAGTGGGTCGGGAT-GTCTGGGTTA 30099619 Query 21907 GTATCTACCAA--TATTCTTGCACCAGTTCCACTACAACGTGACTTAATCTCGTCAAACA 21964 |||| |||| || | |||||| ||| ||||||||| | || || | |||| Sbjct 30099620 CTATC--CCAAACAATCCGTGCACCCTCTCCCGAACAACGTGAGATGATTTCTTTGAACA 30099677 Query 21965 CCTCTTCATGCGCTAACGACGCTTCATTGATATATGCACCAAACGATGTCATACCACG 22022 | | ||||| || ||||| || || || | ||| || ||||| | ||| | |||||| Sbjct 30099678 CTTGTTCATTGGCCAACGATGCCTCGTTCACATAGGCTCCAAAAGCTGTGAAACCACG 30099735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134057560201650