Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq18 140 1e-28 >seq18 Length=80077792 Score = 140 bits (154), Expect = 1e-28 Identities = 223/318 (70%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 55251 TGTCGCACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCA 55310 ||||||| || ||||||||||| ||||| | || || |||| || || || || |||| Sbjct 70158310 TGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCA 70158251 Query 55311 TCGAGCTGTGCCTCGACCACCTCGACCGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTG 55370 | || |||| | ||| | | ||||| |||||| ||||||||||||| ||||| || | Sbjct 70158250 TTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTGCACTCCGGTTCCCGCG 70158191 Query 55371 GCGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTGCCTCGCCA 55430 | || || |||||||| || ||||||||||| || || || || || | || Sbjct 70158190 GTGTGGGCAACAAGATTGCAAAGAAGCACATTAAGATTGCCCA--GCGTCTGTGTGAGCA 70158133 Query 55431 ACG--GGCTGCAGGTGCCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTT 55488 | || | | |||| |||||||| |||||||| | || |||| || ||||| Sbjct 70158132 GTGGTGGATTCCCCTGCCCAACAAGGATTTGGCGTACTTGGTGCAGGGGACCCCAGAGTT 70158073 Query 55489 CGACCGCTACCTCGTCGAATTGCGCTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGA 55548 | | || || || ||| |||||||||||||| || | | |||||| | || Sbjct 70158072 CAAGGCTTATCTGCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGTGAGGA 70158013 Query 55549 GATGATGGACCGATTCGC 55566 ||||||||||| ||||| Sbjct 70158012 AATGATGGACCGTTTCGC 70157995 Score = 91.5 bits (100), Expect = 6e-14 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 54899 ACGCTTGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGCATGTGGCGCTG 54958 ||||||| ||| || |||||| | || | ||||| || | || |||||||| ||||| Sbjct 74070646 ACGCTTGAGCAAGCCCAGCAGCTGGCAAAACTGCCGTTTATTTACCCGCATGTTGCGCTC 74070705 Query 54959 ATGCCCGATGCGCATTTCGGCA-AGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGG 55017 |||||||| || || ||| |||| | | || || || ||| || ||| | Sbjct 74070706 ATGCCCGACGCCCACACCGGGTTAGGGTCGTCG-GTGGGAACCGTGTTCGGCACCATTGA 74070764 Query 55018 CGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATCGCGGCCCGCAC 55077 ||||| ||||||||||| ||||| || || || || ||||||||||| || | || || Sbjct 74070765 TGCCGTGATTCCCGCCGCCGTGGGCGTTGACATCGGATGCGGCATGATTGCCGTGCGTAC 74070824 Query 55078 CACGTACACGGCGAACGATCTTGAGGG 55104 | | |||||| | |||| | | ||| Sbjct 74070825 CCAATTCACGGCCACCGATTTGGCGGG 74070851 Score = 82.4 bits (90), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 972 GCGCCTGGGTGTGTAGCTCAATCGGTAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGT 1031 |||| | || | |||||||||| || |||||||||||||||||| |||| ||||||| || Sbjct 68267899 GCGCATAGGGGCGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGT 68267958 Query 1032 TCGAGTCGTGCCGCGCCCGC 1051 || |||| || ||| || || Sbjct 68267959 TCAAGTCCTGTCGCCCCTGC 68267978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193827142457550