Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028984.1 Length=30664 Score E Sequences producing significant alignments: (Bits) Value seq18 179 7e-41 >seq18 Length=80077792 Score = 179 bits (198), Expect = 7e-41 Identities = 159/199 (80%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 27865 TAGCATATGCAAACTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAAC 27924 ||||| ||| | ||||| ||||| || ||||||| ||||| | ||||||||| |||| Sbjct 59386091 TAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGCGAAC 59386032 Query 27925 GTGAAGCTGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACT 27984 |||| |||||||| || ||| ||||||| |||||||| || ||||||||| | ||||||| Sbjct 59386031 GTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACT 59385972 Query 27985 GGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAA 28044 ||||||||||||| ||||| | || || || || || || ||||| || | ||| || | Sbjct 59385971 GGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTACGATA 59385912 Query 28045 ACCAACAAGGTCAGCGTGT 28063 |||| ||||| || ||||| Sbjct 59385911 ACCAGCAAGGACAACGTGT 59385893 Score = 127 bits (140), Expect = 4e-25 Identities = 188/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 24196 AAACGAATTAGCG------AAAGGAAGTTACTTAACAGATTTGCAAAAGCTTGATGGAAA 24249 |||||||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 30108070 AAACGAATTAGCACAAACAAAAGGCGCATATTTAACAGACTTACAAAAACTTGACGGAGC 30108011 Query 24250 TACTTTGCGAGATTTTGTAGACCCGCAAAATAAAGCGACTCCGCAAGAACTACAAGCTCT 24309 || ||| || |||| || ||||| || || |||| | ||||| ||| | || | | Sbjct 30108010 AACCTTGAGAAATTTCGTTGACCCAAAACATCAAGCAAGCCCGCAGGAATTGCAGACATT 30107951 Query 24310 TTTAGCAATTGTGAAAGGACGTAATTTAAATCCTTTCACAAAAGAGGTTTACTTCATCAA 24369 ||||| ||||| ||| ||||||||||| || ||||| ||||| ||||| || || || Sbjct 30107950 GTTAGCTATTGTTAAAAATCGTAATTTAAACCCGTTCACGAAAGAAGTTTATTTTATTAA 30107891 Query 24370 ATACGGCTCTGCGCCTGCACAAATTGTAGTCAGCAAAGAAGCGATTATGAAGCGTGCAGA 24429 ||||||| || || ||||| || || || || || | ||||| || || || Sbjct 30107890 ATACGGCAACAATCCCGCTCAAATCGTTGTTTCAAAGGATGCCTTCATGAAACGCGCTGA 30107831 Query 24430 AGAAAATCCAAATTTCGACGGATTTGA 24456 | |||||| |||| || |||||||| Sbjct 30107830 ACAAAATCAGAATTATGATGGATTTGA 30107804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98003170905300