Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028986.1 Length=153401 Score E Sequences producing significant alignments: (Bits) Value seq18 161 1e-34 >seq18 Length=80077792 Score = 161 bits (178), Expect = 1e-34 Identities = 523/799 (65%), Gaps = 25/799 (3%) Strand=Plus/Plus Query 47970 GGTCAGTCGATGATCGGCCCGATCCAGCTCCAGCTGCGTTACCAGGGCATCCTGCGTAAC 48029 ||| |||| ||||| || || |||||||| |||||||||| ||||| || |||| ||| Sbjct 39945123 GGTAAGTCCATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAAC 39945182 Query 48030 GTCCTGCTGGAGGACACGCTGACCCCCGGCGTGCCGATCCAGTACGACGTGCTGGACGAC 48089 || || |||| || | || || || || ||| | ||||||||||| || ||| | Sbjct 39945183 GTTCTTTTGGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAG 39945242 Query 48090 CTGGGCCAGGCCTACATGCTGCACGGCAATGAGGGCGAGATCCGCATCACCCCCTTCGAG 48149 ||||||||| || || ||||| || ||| || || | ||| || ||| Sbjct 39945243 TGGGGCCAGGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAG 39945302 Query 48150 GGCAAGCGTATCGAGGTCCAGCTGTTCCGCATCGCGAGCTTCCCGCAGATCAAGAAGGAA 48209 | |||||| | |||| | ||||||||||| || |||||| || || || || Sbjct 39945303 GCAAAGCGTGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAG 39945362 Query 48210 GACCTGT--ACTACCTCCGCAGCAACATCGTGGAGTACACGCAGGACATGACCAAGCAGG 48267 || | | | || |||| || | || ||||| | ||||| | | || | | Sbjct 39945363 GATGTTTGGATGGCCCGCGCA--AATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAG 39945420 Query 48268 CCATCATGCGCCAGGAGGACTCGCGCCTCGTGACGCTGCTGGAAGCTGCAGCGGTCTCCT 48327 | || ||| | ||| |||||||| || || || ||| |||||| ||| | || Sbjct 39945421 CTATTATGAAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTA---TTTCGC 39945477 Query 48328 ACCGCGTCGTGGACAGCTCGGCTCAGC-CGGGC-GTCGGCGCACTGCCCAACGAGATCAC 48385 | | | ||| | ||| | || || | | || || |||| ||||| || || Sbjct 39945478 AGTTCCAGGCTAACAACCCGGAT--GCTCGTACTGGTGGTGCTTTGCCGAACGAAATTAC 39945535 Query 48386 CATCGCAGGCTCGCACCTGATGCCCGAT---GATCTCTACACGGCGGTGACCTACACCG- 48441 |||||| || || || ||| | ||||| || | || || | || ||| Sbjct 39945536 CATCGCT---TCCGACTACATTACCGCTAACGATCTGTATTCCGCTGTTTC-TATCCCGG 39945591 Query 48442 --ACCAGCGTCAGCTGGACAGCTCGCGCCTGCTGGCGAACCCGCAGGAGTACCGCGACCT 48499 ||| ||||||||||| || ||| | ||| || | | || ||||| ||| | Sbjct 39945592 ATACC--CGTCAGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTT 39945649 Query 48500 GTACCGGTGGGACATCAACACGACCGGTTGGGCCTTCAAGGACTCGGTGGTCGCTGGCGA 48559 ||||| ||||| |||||| || |||||||| ||||| || || || ||||| || Sbjct 39945650 CTACCGCTGGGAAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGA 39945709 Query 48560 GCGCATCGTCCAGTTCGGCGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCA 48618 ||| | ||||| || |||||||| || || || |||| ||| ||| |||| Sbjct 39945710 AACTATCACCACTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCA 39945768 Query 48619 CCGTCTACCTGACCCCGGAGCCCGAGTTCCTCGGCGTCTTCCCGGTCATGTACTCCCTCG 48678 | | || || || || | || || ||||| || || | || || |||||||| || | Sbjct 39945769 CAATGTATCTTACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGG 39945828 Query 48679 ATGTCGAGGAGGACAACAAGGTGGAGCGGTTCAACAAGGGCTGGGTCATGGACGAGCTGG 48738 |||| ||||| |||||||||| || ||| | | || ||||| ||||| || || Sbjct 39945829 ATGTGGAGGAAAACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTA 39945888 Query 48739 TCGGCATGGCCGTGCTCAA 48757 |||||||||| | ||||| Sbjct 39945889 TCGGCATGGCTATTCTCAA 39945907 Score = 109 bits (120), Expect = 5e-19 Identities = 185/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 42820 GGGCCATCTCGGCGCGAGTTAACCAGAACTACGATGGTTGGCCATCAGACGAGCTGAAGA 42879 |||| || || | ||||| |||||||||| |||| ||||| || || || || | Sbjct 39942173 GGGCTATTTCTTCCCGAGTGAACCAGAACTTTGATGCGTGGCCGTCTAGTGAACTTAAAA 39942232 Query 42880 AGGCCGCGCACACCTTCATCGGAAAGCCGGTCTTCGTCAACCACGAGAACTACGACCCCA 42939 |||| | ||||| | || ||||| || ||||| ||||| | || | ||||||| Sbjct 39942233 AGGCTTACAAAACCTTTTTAGGCAAGCCTGTTTTCGTTAACCATGTTAATGATGACCCCA 39942292 Query 42940 AGAAGGCCCGGGGAGTTGTTGTCGCGGCTCGGTACGTCGAGAACGGCAATGACAAGTTCA 42999 ||| ||||| || |||||||| || ||| | || || |||| || || |||| || Sbjct 39942293 CGAAAGCCCGTGGCGTTGTTGTTGCTTGTCGTTTTGTTGAAGACGGTAAAGATAAGTACA 39942352 Query 43000 TCGAGGTCATTCAGGAAATCGACGCCAAGCGTTTCCCAAAGCTGGCCCACGAGATCCGCA 43059 |||| |||||||||||| |||| || || ||||| ||| || | || || Sbjct 39942353 TCGAAGTCATTCAGGAAGTCGATGCAGAGAAATTCCCTTTGCTTGCAAAAGAACTCATTG 39942412 Query 43060 CCGGCGGACTTGACTCTGTGTCGATGGG 43087 || ||| | |||||||| || ||||| Sbjct 39942413 AAGGTGGATTAGACTCTGTTTCTATGGG 39942440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490755046639000