Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq18 244 1e-59 >seq18 Length=80077792 Score = 244 bits (270), Expect = 1e-59 Identities = 327/452 (72%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 38396 GTTACTACTCCTAAATTCATACGACCAGAGTTTACTTCGTTTCCATGTTCATCTTTCCAT 38455 || || || |||| |||||| ||||| || || || || |||| ||||||||||||| Sbjct 63062710 GTCACAACACCTAGATTCATCCGACCTGAATTGACCTCAACACCATTTTCATCTTTCCAT 63062651 Query 38456 CCTTGTAAGAATGAACGACAACCCATAGGACATTTAAATGAACCTGTTAGCTCAACAATT 38515 ||||| | ||| ||||| || ||||||||| || || |||||||| || || | ||| Sbjct 63062650 CCTTGGAGGAAAGAACGGCAGCCCATAGGAACCTTGAAAGAACCTGTCAGTTCGATAATC 63062591 Query 38516 TTGTCATAGTTCAAAATATCAGGGTACATACGTTTAGCTGAACATTCTAATGCTAACTGT 38575 || || ||| ||| | |||||||||||| || || | || ||| || | || |||||| Sbjct 63062590 TTATCGTAGGACAAGACATCAGGGTACATCCGCTTGGTTGCACACTCGAGGGCCAACTGT 63062531 Query 38576 TTTACTTCATAGTTAGGG------TCTTCTGGTTTACGGTTAACTCCGTCTTTAATAGTG 38629 || | || |||||||| |||||| || || ||| | |||||| || Sbjct 63062530 TTGATATCGTAGTTAGGTGAACCCTCTTCTAAGTTGAGGC---CTC--TTTTTAAT-GTA 63062477 Query 38630 AACAATAATTTAGGGAAGATTGCTGTACGTCCTTCTGTTCCTAGACCTTGGATACGTACT 38689 || | | |||||||||||| ||||| || ||||| || || || | ||| || | Sbjct 63062476 AAGATGAGTTTAGGGAAGATGGCTGTGCGGTGTTCTGAACCAAGTCCCTTGATTCGGATG 63062417 Query 38690 TTAAAAATAGCTTTTTGGATTTCTCTTTCCCAACGTCCAGTACCTAAACCAAAACCAATA 38749 || || ||||||||||| ||||| | || |||| | ||| |||||||||||||| | Sbjct 63062416 TTTAAGATAGCTTTTTGAATTTCCCGCTCAAAACGACTAGTCCCTAAACCAAAACCTAGC 63062357 Query 38750 GACGTGAAAGGGGTCTGACCATTCGATGTAAATAACGTATTGATTTCATACTCTAGGCTT 38809 || || ||||| || || ||||| || || || | || |||||||||||||| || | Sbjct 63062356 GAAGTAAAAGGTGTTTGCCCATTTGAAGTGAAGAGAGTGTTGATTTCATACTCAAGAGAT 63062297 Query 38810 TGCATTGCATCGTAAATATCTTTGTTTGTTTT 38841 ||||| |||||||| || ||||| | ||||| Sbjct 63062296 TGCATGGCATCGTAGATGTCTTTTTGGGTTTT 63062265 Score = 179 bits (198), Expect = 3e-40 Identities = 229/315 (73%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 37687 ATCAATTGGGGTGTTTGTTCCAAGATAACCAACTTTATCGTAGCTGTAGTCCCAAACAGC 37746 |||||| || || || ||||| ||||| || || || ||| |||||||| ||||| Sbjct 63063455 ATCAATCGGAGTATTGGTTCCTAGATAGCCGACACGGTCATAGGCATAGTCCCAGACAGC 63063396 Query 37747 TTCTAACGCCTTAAGGTTGTGAACTAGTTTAGGGTATTCTACATAATGGATAAAACCACC 37806 ||| | || ||| | || || || || || || ||||||||| |||||||| Sbjct 63063395 TTCCAGAGCTTTAGGATTTTGTTGAAGAACTGGATACTCACAATAATGGATGAAACCACC 63063336 Query 37807 GGAAGCATAT---TTTGGAAACTCTTTTTCAAAATCAATCTTTTCAAAAGGTGTTGGAGC 37863 || ||| | | ||| | ||||||||||||| | ||||||||| ||||||||| Sbjct 63063335 TGACGCACCTGCTTCTGGGTAGACTTTTTCAAAATCCAGCTTTTCAAACGGTGTTGGATT 63063276 Query 37864 TTTGCGAACATCATAGTGGAAGCTATTTGTATAATATTCTTTATCTGTGATATTCTCAAT 37923 ||| || |||||||||||||| || || || ||||| || ||||| |||| | ||| Sbjct 63063275 TTTACGGACATCATAGTGGAAAGAGTTGGTGTAGTATTCCTTGTCTGTAATATCCGGAAT 63063216 Query 37924 AACTCCGTATTTTTCTGTATCCATGCGACAGAATCTATCAGTTAAACTTTCACTTGGTGT 37983 | ||| | || |||||||||| ||||| || | || || |||||||| |||||| Sbjct 63063215 AGAGCCGAACTTCTCTGTATCCAAACGACAAAAACGGTCTGTCAAACTTTCGGATGGTGT 63063156 Query 37984 TGAGTAGATAGAGAA 37998 ||||||||||||||| Sbjct 63063155 TGAGTAGATAGAGAA 63063141 Score = 150 bits (166), Expect = 2e-31 Identities = 248/358 (69%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 38927 GCTAATACTTCATCAATGCGGTCAAATGAACAACCCCCATACTGACTGGAAGCCACATTC 38986 || || ||||||||||| |||||| ||| |||||||| ||||| || ||||| ||||| Sbjct 65718058 GCCAAGACTTCATCAATACGGTCAGCTGAGCAACCCCCGTACTGGCTAGAAGCAACATTG 65717999 Query 38987 GCAATAATTTGTGCTGTTTGTGCTGTAGCTGTTTGAATGGAATGAGGTGAACCGATTTCT 39046 || || ||||||| |||| ||||| || || || || || | || | | ||| Sbjct 65717998 GCGATGATTTGTGAAATTTGAGCTGTCGCAGTCTGGATAGACTTGGGACTCTCTACCTCT 65717939 Query 39047 GCATTACCCATTTTAAACCCGTTCTTCAACATATATTCAAAGTCAATCAAACAACAATTT 39106 ||||| || || ||||| || || | || ||| || ||| ||||||||||| || || Sbjct 65717938 GCATTCCCAATCTTAAAACCATTTTCCAGCATGCCTTTAAAATCAATCAAACAGCAGTTG 65717879 Query 39107 GTCATTGGACGATAAGGTTGGTAGTCTAAATCGTGATAATGAATATCTCCACGTAAATGT 39166 ||||| ||| || || |||||| || || ||||| || ||||| || | || Sbjct 65717878 GTCATCGGAGTGTAGGGGCTGTAGTCCAAGTCATGATAGTGGATATCCCCTTTTTGGTGA 65717819 Query 39167 GCGTTAGCTACATGAGGAGGGAGCATTTTAAGACCCTCAACTTTGTTAACTGTACCTGCT 39226 || || ||||| || ||| ||||||| || || ||| ||| | |||||| Sbjct 65717818 GCATTGGCTACGTGCTTAGGAAGCATTTGCAGTCCGATTGATTTCCCAACAATCCCTGCT 65717759 Query 39227 GTAAGGTCTCGTTCTGTTGCAAAGGTATTTGAGTCCTTATTTGCATTCTCATTGACAA 39284 || | || |||| || |||| || ||| ||||| ||||| |||||||||| Sbjct 65717758 GTCAAATCACGTTGAGTGTTAAAGACATCGCTGTCTTTATTGGCATTTTCATTGACAA 65717701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 46020 GGAAGGCATGGGATTCGAACCCACACATGCTGTTACACATCTACTTGGTTTCCAACCAAG 46079 ||||| |||||||||||||||||| || |||||||||| |||| ||||||||| | Sbjct 62904266 GGAAGACATGGGATTCGAACCCACGCACGCTGTTACACGCCTACCGCGTTTCCAACACGG 62904325 Query 46080 CCTCTTTA-CCGTTTGAGTAACCTTCC 46105 |||||| | || |||||||| ||||| Sbjct 62904326 CCTCTTAAGCCTCTTGAGTAATCTTCC 62904352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472156652451000