Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_029030.1 Length=31075 Score E Sequences producing significant alignments: (Bits) Value seq18 187 5e-43 >seq18 Length=80077792 Score = 187 bits (206), Expect = 5e-43 Identities = 163/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28686 AATTTAGCATACGCAAACTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGT 28745 ||| ||||| || | ||||| ||||| || ||||||| ||||| | ||||||||| Sbjct 59386095 AATGTAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGC 59386036 Query 28746 GAACGTGAAGCTGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCT 28805 |||||||| |||||||| || ||| ||||||| |||||||| || ||||||||| | ||| Sbjct 59386035 GAACGTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCT 59385976 Query 28806 AACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTAT 28865 ||||||||||||||||| ||||| | || || || || || || ||||| || | ||| Sbjct 59385975 AACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTAC 59385916 Query 28866 GAAAACCAGCAAGGACAGCGTGT 28888 || |||||||||||||| ||||| Sbjct 59385915 GATAACCAGCAAGGACAACGTGT 59385893 Score = 167 bits (184), Expect = 5e-37 Identities = 213/293 (73%), Gaps = 9/293 (3%) Strand=Plus/Minus Query 24394 AGAAGAAAATGGCAAAAAATGAATTAGTA------AAAGGTGAATATTTAACAGATTTGC 24447 ||||||||||| |||| ||||||| | ||||| | |||||||||||| || | Sbjct 30108083 AGAAGAAAATGACAAAC---GAATTAGCACAAACAAAAGGCGCATATTTAACAGACTTAC 30108027 Query 24448 AAAAGCTCGACGGGAATACTCTGCGTAATTTCGTAGACCCGAAACACAGAGCTAGTCCGC 24507 |||| || ||||| || || | |||||||| ||||| ||||| ||| || |||| Sbjct 30108026 AAAAACTTGACGGAGCAACCTTGAGAAATTTCGTTGACCCAAAACATCAAGCAAGCCCGC 30107967 Query 24508 AAGAGCTACAAGCTCTTTTGGCGATTGTCAAAAATCGCAATTTAAATCCGTTCACAAAAG 24567 | || | || | | || || ||||| |||||||| |||||||| |||||||| |||| Sbjct 30107966 AGGAATTGCAGACATTGTTAGCTATTGTTAAAAATCGTAATTTAAACCCGTTCACGAAAG 30107907 Query 24568 AAGTCTACTTCATCAAATACGGCTCAGCGCCTGCGCAGATTGTTGTCAGCAAAGAAGCTA 24627 |||| || || || ||||||||| || || || || ||||| || || || Sbjct 30107906 AAGTTTATTTTATTAAATACGGCAACAATCCCGCTCAAATCGTTGTTTCAAAGGATGCCT 30107847 Query 24628 TTATGAAGCGCGCAGAAGAAAATCCGAATTTTGACGGATTTGAAGCTGGAATT 24680 | ||||| ||||| ||| |||||| ||||| ||| ||||||||| ||| ||| Sbjct 30107846 TCATGAAACGCGCTGAACAAAATCAGAATTATGATGGATTTGAAAGTGGGATT 30107794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99318370514850