Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 136 4e-27 >seq6 Length=22489619 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| | |||||||| ||||| |||||| ||||||| || ||||||||| |||| Sbjct 14545687 GACCTCCCCATAATGGCGCTGCCCCCCTGCCACGCCCTCTGTCAGTTCTACGTCTGCGAC 14545746 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 |||||||||||||| ||||| || || || || | |||||||| | |||||||| || Sbjct 14545747 -GGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGGGTGCCTTT 14545805 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || || || || ||||| |||||||| || || Sbjct 14545806 CAACATCGCCAGCTATGCACTTCTCACCTACATGATTGCACA 14545847 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || || || || || |||||||| |||||||| | ||| Sbjct 14545847 TGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGCACCCCCAGACCC 14545788 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| | || || || || ||||| |||||||||||||| |||| ||||||||| || Sbjct 14545787 ATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCC-GTCGCAGACGTAGAACTG 14545729 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| ||||| |||||||| | ||||| || Sbjct 14545728 ACAGAGGGCGTGGCAGGGGGGCAGCGCCATTATGGGGAGGTC 14545687 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || ||||||||||||||||| ||||||| || ||||| ||||||| | ||| ||| || Sbjct 14544845 GGAGTGAAGATCTGGGACGCCAACGGGTCCCGTGACTTCTTGGACAACCTGGGCTTCACA 14544904 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 |||||||||| ||| |||| || || || || ||||| ||||| ||||| || || Sbjct 14544905 GAGAGGGAGGAGGGGGACCTGGGACCTGTGTATGGTTTCCAATGGAGGCACTTCGGTGCA 14544964 Query 34442 GAGTA 34446 ||||| Sbjct 14544965 GAGTA 14544969 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || || ||||| ||||| ||||| || || || || |||| ||| ||||||||| Sbjct 14544969 TACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTCCCCCTCCTCC 14544910 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | ||||||| ||||| || ||||||| ||||||||||||||| Sbjct 14544909 CTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTC 14544850 Query 7019 ACCCC 7023 || || Sbjct 14544849 ACTCC 14544845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262259918000