Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-15 seq16 89.7 4e-13 >seq13 Length=27080333 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || || || |||| || || || | || || ||||||||||| ||||| Sbjct 11060556 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 11060615 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | ||||||||| | ||| | || ||| || ||| ||| || |||| || Sbjct 11060616 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTC 11060675 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || ||||| | ||||| |||| ||||| |||| || || || || || ||| Sbjct 11060676 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 11060735 Query 39274 AAGATTTGCAT 39284 ||||||||||| Sbjct 11060736 AAGATTTGCAT 11060746 >seq16 Length=24388307 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | ||||| || || ||| ||| || || | || || || | Sbjct 2613272 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGAC 2613213 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| ||||| || || | ||||||||| | || Sbjct 2613212 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 2613153 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||||| ||| ||| | | || || | || | | ||||| || | |||||| Sbjct 2613152 ATGCCTTCTTTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2613094 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 |||| ||||| | || || || || ||||| || || || |||||||| |||| Sbjct 2613093 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTCACGC 2613038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545469122825