Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 141 8e-29 seq19 91.5 1e-13 >seq6 Length=22489619 Score = 141 bits (156), Expect = 8e-29 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| | || Sbjct 14544959 CGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTCCCCCTCCTCCCTCTCTGTGA 14544900 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||||| |||||||| ||||| | ||| |||||||||||||||||||| || || |||| Sbjct 14544899 AGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTCACTCCTTTCT 14544840 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 | || |||||||||| ||||| || || Sbjct 14544839 CTGACAGCTCTTTGGCATTTGTTGATCC 14544812 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| ||||| || | |||||||||||||| || ||| Sbjct 14545859 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14545800 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||||||| | || | |||||| ||||| || || ||||| ||||||| Sbjct 14545799 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 14545740 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| |||||||| | ||| ||||| || || || ||||| Sbjct 14545739 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 14545699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||||||||||| |||||| || | ||||| ||||| ||| ||||| || Sbjct 14545613 CTTTGGGGTTCCAGGCACACATGATGATCCGTCGATCTTCCGGGTTTTTCTTGATGGTGT 14545554 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCC 29973 | | | |||||||||||| || || || Sbjct 14545553 CAATGATGTTTTGCAGCTGGTCGACACC 14545526 >seq19 Length=33316517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | |||| || |||| || || ||||| || ||||| || Sbjct 4585294 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 4585353 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| | |||||| |||| | | ||| Sbjct 4585354 GAACCAGGTCTTCCTGCCCATGACCACCACATTCTTCCTGCCT 4585396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163076247150