Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq18 111 9e-20 >seq18 Length=80077792 Score = 111 bits (122), Expect = 9e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43060 GACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGAC 43119 ||||||||||| | || || || |||||| | |||||||||||||| ||| ||| || Sbjct 69190664 GACGCGGACCCCGAGGTTGATGTGATCATCATCGCCCGCGGCGGCGGTTCGGTGGAGGAT 69190723 Query 43120 CTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCG-CGTTCGCGTCTGCAACCCCGGT 43178 || || |||| ||||| || || ||| ||||| | | |||| | || |||||||| Sbjct 69190724 CTGCTGCCGTTTTCCGAGGAAGCGCTGCAACGCGCGGTCTCACGCGCCCGC-ACCCCGGT 69190782 Query 43179 TGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCG 43238 || || |||||||| |||||| ||| ||| | || ||| || | ||||| || Sbjct 69190783 GGTATCGGCGATTGGGCACGAGCCGGATAACCCGGTGCTGGACAATGTAGCTGACCTGCG 69190842 Query 43239 AGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGTGCAC 43287 || || || || ||||| || || ||||| || || || || ||||| Sbjct 69190843 CGCCGCCACCCCCACGGACGCGGCAAAACGCGTGGTTCCGGA--TGCAC 69190889 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 47474 CTGCCGTTCATTCACCCTCACGTCGCCCTGATGCCGGATGCACACGGCGGCAAAGGATCT 47533 |||||||| ||| |||| || || || || ||||| || || ||| ||| ||| || Sbjct 74070676 CTGCCGTTTATTTACCCGCATGTTGCGCTCATGCCCGACGCCCACACCGGGTTAGGGTCG 74070735 Query 47534 GCCGTTGGCACGGTGATTCCCACCGTGGATGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 47593 | || || || ||| | |||| | ||||||||||| || ||||| || ||||| ||| Sbjct 74070736 TCGGTGGGAACCGTGTTCGGCACCATTGATGCCGTGATTCCCGCCGCCGTGGGCGTTGAC 74070795 Query 47594 ATCGGCTGCGGCATGATCGGCGT 47616 ||||| ||||||||||| | ||| Sbjct 74070796 ATCGGATGCGGCATGATTGCCGT 74070818 Score = 95.1 bits (104), Expect = 7e-15 Identities = 132/184 (72%), Gaps = 12/184 (7%) Strand=Plus/Minus Query 47772 TGGCCGAGGAGAAGGGGGTCGACCTCAAGCACTCGCCGAAGTGGCGCGAGCAGCTGGGTT 47831 |||| || ||| ||| || || | ||| |||||||||||||| ||||| | |||| Sbjct 70158334 TGGCTGAAGAGCTGGGTGTGGATTTGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTT 70158275 Query 47832 CACTGGGTGGTGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGTACAACCAGGGCCCGG 47891 | |||||||||| ||||| ||||| || |||| || || | || || ||| Sbjct 70158274 CGTTGGGTGGTGGTAACCATTTCATTGAATTGTG------TTTGGACGAGCA-GGACCGC 70158222 Query 47892 GTGAGATCTGGCTGTTCCTCCACTCGGGGTCGCGCGGCGTCGGCAACAAGATCGCGCAGA 47951 ||| ||| ||||||| ||||| || || ||||| || ||||||||||| || ||| Sbjct 70158221 GTG-----TGGATGTTCCTGCACTCCGGTTCCCGCGGTGTGGGCAACAAGATTGCAAAGA 70158167 Query 47952 AGCA 47955 |||| Sbjct 70158166 AGCA 70158163 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72070 TGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGAGAAC 72129 ||| | |||| ||||||| | | ||| |||||| | ||||| | | || || ||| Sbjct 63388450 TGGGAAGACGGCGAGGCGATGTACCTTACCTGCAATGTGTGGCGTCAAGCAGCGGAAAAC 63388391 Query 72130 GTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGCCTCAAGCAGCGC 72189 || | ||||| ||||| ||||||||||||||||| || |||||||| || ||||||| Sbjct 63388390 GTTGCTGAGTCCCTGTCAAAGGGCATGCGCGTCATTGTGCAGGGTCGACTGCGGCAGCGC 63388331 Query 72190 AGCTACGA 72197 |||||| Sbjct 63388330 TCCTACGA 63388323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297919909227500