Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq20 271 6e-68 seq6 172 4e-38 >seq20 Length=26302745 Score = 271 bits (300), Expect = 6e-68 Identities = 244/304 (80%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 69007 GTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGC 69066 |||||| || ||||||||||| | ||||| || |||||||||||||| || ||||| | Sbjct 20442494 GTCCAGTTGGAGCCAAACTGACCGTTGGACCAGTGGAGGACACAGAGTACAATGACAGCC 20442553 Query 69067 CTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGAC---GATGCAGG 69123 ||| ||||||||||| |||||||||||||||| | ||| | | || |||| ||| Sbjct 20442554 CTGAAGTGGTGAACGCATGGGGAAAGTTTTATCTTCCC---GAAATAACAAAGATGGAGG 20442610 Query 69124 TCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCG 69183 | ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||| | Sbjct 20442611 TTATCGGCTATGTGGAGGGAACAGCATACCCATGTGACCAGCTTGTCCTGATGACCTGTG 20442670 Query 69184 AGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGG 69243 ||||||||||||||||||||| ||| ||||||||||||||| |||||||| | ||| Sbjct 20442671 AGGACCAGAAGGTGTACGGCTTTGATGGAGACGAGCTGCATCTGGTGGCTTTATCCCTGA 20442730 Query 69244 ATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGG 69303 || || ||||| ||| || |||||||||||| || || ||||| ||||||| | Sbjct 20442731 GAGAGGTGTTAGAAGAGGGAGTAAACTATCCTGCATTACAAAGTTATTACTATGGGGA-G 20442789 Query 69304 CCTT 69307 |||| Sbjct 20442790 CCTT 20442793 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 ||||| |||||||||| | |||| |||| ||||| ||| || | |||||| ||||| Sbjct 20442883 GACCACAGAGGACTGGGCGGAGGTTGAGCAGGGCCCTCTGGGGAAGAAGTTGGAAGAGGA 20442942 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 ||||| ||||||||||| ||||| ||||| || | |||| |||||||| || || ||| Sbjct 20442943 GCATCGTAAACTGGTGGCTTCTCACAAATCCGCTTTCCTGAAGAATCTCAAAAACATCAG 20443002 Query 69437 ACA 69439 || Sbjct 20443003 CCA 20443005 >seq6 Length=22489619 Score = 172 bits (190), Expect = 4e-38 Identities = 139/168 (83%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||||| |||||||||| ||||| |||||||||||||| || ||||| ||||||||||| Sbjct 14544979 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTC 14544920 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| ||||| | ||||||| |||||||| ||||| | ||| ||||||||||| Sbjct 14544919 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 14544860 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || || ||||| || |||||||||| ||||| || || Sbjct 14544859 CCAGATCTTCACTCCTTTCTCTGACAGCTCTTTGGCATTTGTTGATCC 14544812 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 14545859 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14545800 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || |||||||| | || | |||||| |||||||| || ||||| || |||| Sbjct 14545799 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 14545740 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||| |||||||| | ||||||||| || || || ||||| Sbjct 14545739 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 14545699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507087415775