Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq18 125 4e-24 >seq18 Length=80077792 Score = 125 bits (138), Expect = 4e-24 Identities = 219/319 (69%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 78848 GAGCTCAAGGAGTACACGTTCGATCTGCTCTCGGAGCTCTACGACAACGAGTGTGACTAC 78907 || ||||| |||| ||| | |||||| ||| ||| || ||||||||||| | | ||| Sbjct 49727435 GAACTCAAAGAGTTCACATACGATCTTCTCATGGAACTGTACGACAACGAAATTAAATAC 49727376 Query 78908 ACCGAGCAGCTCTATGACGACGTCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTAC 78967 || | | ||||||| || | ||| || || ||||| | ||||||| ||| Sbjct 49727375 ACACAAGAAATCTATGATGATCTTGGATGGACTGAAGATGTTCGGCGGTTCCTGAAATAC 49727316 Query 78968 AACGGCAACAAGGCGCTGATGAACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACC 79027 |||| ||||| || |||| || ||||| || |||| | ||||| ||| || || Sbjct 49727315 AACGCGAACAAAGCCCTGAATAATCTCGGATATGAAGGGTTATTCCCGGCGGATGAAACA 49727256 Query 79028 ATGGCAGACCCGGCCATCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTC 79087 || ||||| || | || | || || || | || | || ||||| |||||| Sbjct 49727255 CGGGTTTCCCCGGAAATTCTTTCTTCACTATCCCCGGACGCTAATGAAAACCATGACTTC 49727196 Query 79088 TTCTCCGGGTCGGGCTCGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGAC 79147 ||||| || || || || |||||| || |||||||||||| | || | |||||| ||| Sbjct 49727195 TTCTCTGGTTCCGGATCTTCCTACGTTATTGGCAAAGCTGAATCAACTGAAGATGATGAC 49727136 Query 79148 TGGGACTTCTGATGAAAAC 79166 ||||| || | | ||||| Sbjct 49727135 TGGGATTTTTAAATAAAAC 49727117 Score = 104 bits (114), Expect = 1e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 45294 CTGCCGTTCATCCATCCGCACGTGGCGCTGATGCCGGATGCTCACAGCGGCAAGGGGTCC 45353 |||||||| || | ||||| || ||||| ||||| || || |||| ||| ||||| Sbjct 74070676 CTGCCGTTTATTTACCCGCATGTTGCGCTCATGCCCGACGCCCACACCGGGTTAGGGTCG 74070735 Query 45354 GCGGTCGGCACTGTGATCCCGACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGAC 45413 |||| || || ||| || ||| | ||||| ||||| ||||| || || ||||| ||| Sbjct 74070736 TCGGTGGGAACCGTGTTCGGCACCATTGATGCCGTGATTCCCGCCGCCGTGGGCGTTGAC 74070795 Query 45414 ATCGGCTGCGGCATGATCGGCGTGC 45438 ||||| ||||||||||| | ||||| Sbjct 74070796 ATCGGATGCGGCATGATTGCCGTGC 74070820 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 42243 TGAAGGCACTGGATGCCGACCCCGAGGTTGACGTCATCATCTTCGCCCGCGGCGGCGGGT 42302 ||||| ||||||| || |||||||||||||| || |||||| |||||||||||||||| | Sbjct 69190654 TGAAG-CACTGGACGCGGACCCCGAGGTTGATGTGATCATCATCGCCCGCGGCGGCGGTT 69190712 Query 42303 CCAACCAGGACCTCCTTCCCTGGTCCGACGAGGGCCTCTCCCGGGCCGTGTTCGCCGCTA 42362 | |||| || || || | ||||| || | || || || || | ||| Sbjct 69190713 CGGTGGAGGATCTGCTGCCGTTTTCCGAGGAAGCGCTGCAACGCGCGGTCTCACGCGCCC 69190772 Query 42363 ACACGCCCACGGTCAGCGCCATCGGACACGAGAACGACAAGCCGATGCTGGACCGGGTTG 42422 ||| || ||| || || || |||||| || || ||| |||||||| || | Sbjct 69190773 GCACCCCGGTGGTATCGGCGATTGGGCACGAGCCGGATAACCCGGTGCTGGACAATGTAG 69190832 Query 42423 TGGACCTGCGAGCTGCGACTCCGACAGATGCGGCAAAACGTGTCGTACC 42471 |||||||| || || || || || || ||||||||||| || || || Sbjct 69190833 CTGACCTGCGCGCCGCCACCCCCACGGACGCGGCAAAACGCGTGGTTCC 69190881 Score = 98.7 bits (108), Expect = 6e-16 Identities = 117/156 (75%), Gaps = 12/156 (8%) Strand=Plus/Minus Query 45620 GCACTCGCCGAAGTGGCGTGAACAGCTGGGCTCACTCGGCGGTGGCAACCACTTCATCGA 45679 ||| ||||||||||||||| | ||| | || || | || ||||| ||||| ||||| || Sbjct 70158306 GCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCATTGA 70158247 Query 45680 ACTATGTGAGCAGATCGAGGGTGACGGCACCGGATCGCTGTGGCTGTTCCTGCACTCCGG 45739 | | ||| | | |||| | | |||| || ||||| |||||||||||||||| Sbjct 70158246 ATTGTGTTTGGA---CGAG-----CAGGACCG---CG-TGTGGATGTTCCTGCACTCCGG 70158199 Query 45740 TAGCCGCGGTGTCGGCAACAAGATCGCGCAGAAGCA 45775 | ||||||||| ||||||||||| || ||||||| Sbjct 70158198 TTCCCGCGGTGTGGGCAACAAGATTGCAAAGAAGCA 70158163 Score = 95.1 bits (104), Expect = 7e-15 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 4258 CATATGGGCGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCG 4316 |||| ||||||||||||||||| ||||||||||||||||||||||| || || |||||| Sbjct 68267902 CATAGGGGCGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCA 68267961 Query 4317 AGTCCTGCCGCC 4328 ||||||| |||| Sbjct 68267962 AGTCCTGTCGCC 68267973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299321508800450