Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq18 111 9e-20 >seq18 Length=80077792 Score = 111 bits (122), Expect = 9e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43261 GACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGAC 43320 ||||||||||| | || || || |||||| | |||||||||||||| ||| ||| || Sbjct 69190664 GACGCGGACCCCGAGGTTGATGTGATCATCATCGCCCGCGGCGGCGGTTCGGTGGAGGAT 69190723 Query 43321 CTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCG-CGTTCGCGTCTGCAACCCCGGT 43379 || || |||| ||||| || || ||| ||||| | | |||| | || |||||||| Sbjct 69190724 CTGCTGCCGTTTTCCGAGGAAGCGCTGCAACGCGCGGTCTCACGCGCCCGC-ACCCCGGT 69190782 Query 43380 TGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCG 43439 || || |||||||| |||||| ||| ||| | || ||| || | ||||| || Sbjct 69190783 GGTATCGGCGATTGGGCACGAGCCGGATAACCCGGTGCTGGACAATGTAGCTGACCTGCG 69190842 Query 43440 AGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGTGCAC 43488 || || || || ||||| || || ||||| || || || || ||||| Sbjct 69190843 CGCCGCCACCCCCACGGACGCGGCAAAACGCGTGGTTCCGGA--TGCAC 69190889 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/188 (71%), Gaps = 12/188 (6%) Strand=Plus/Minus Query 47957 GCCATGGCCGAAGAGAAGGGCGTCGACCTCAAGCATTCGCCGAAGTGGCGGGAACAGCTG 48016 ||| |||| |||||| ||| || || | |||||||||||||||||| | ||| | Sbjct 70158338 GCCCTGGCTGAAGAGCTGGGTGTGGATTTGTCGCATTCGCCGAAGTGGCGTCAGCAGTTA 70158279 Query 48017 GGCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGA 48076 || ||| | || || || ||||| ||||| || |||| || |||||| ||| Sbjct 70158278 GGTTCGTTGGGTGGTGGTAACCATTTCATTGAATTGTG------TTTGGACGAGC-AGGA 70158226 Query 48077 CCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAACAAGATCGCG 48136 ||| | | ||| | |||||||| ||||| ||||||||| ||||||||||| || Sbjct 70158225 CCGCG-----TGTGGATGTTCCTGCACTCCGGTTCCCGCGGTGTGGGCAACAAGATTGCA 70158171 Query 48137 CAGAAGCA 48144 ||||||| Sbjct 70158170 AAGAAGCA 70158163 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 47663 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 47722 |||||||| || | || || || || |||||||| || || ||| ||| ||| || Sbjct 74070676 CTGCCGTTTATTTACCCGCATGTTGCGCTCATGCCCGACGCCCACACCGGGTTAGGGTCG 74070735 Query 47723 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 47782 | || || || ||| | ||| | || |||||||| || ||||| || ||||| ||| Sbjct 74070736 TCGGTGGGAACCGTGTTCGGCACCATTGATGCCGTGATTCCCGCCGCCGTGGGCGTTGAC 74070795 Query 47783 ATCGGCTGCGGCATGATCGGCGTG 47806 ||||| ||||||||||| | |||| Sbjct 74070796 ATCGGATGCGGCATGATTGCCGTG 74070819 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72436 TGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGAGAAC 72495 ||| | |||| ||||||| | | ||| |||||| | ||||| | | || || ||| Sbjct 63388450 TGGGAAGACGGCGAGGCGATGTACCTTACCTGCAATGTGTGGCGTCAAGCAGCGGAAAAC 63388391 Query 72496 GTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTCAAGCAGCGC 72555 || || ||||| ||| | ||||||||||||||||| || ||||| || || ||||||| Sbjct 63388390 GTTGCTGAGTCCCTGTCAAAGGGCATGCGCGTCATTGTGCAGGGTCGACTGCGGCAGCGC 63388331 Query 72556 AGCTACGA 72563 |||||| Sbjct 63388330 TCCTACGA 63388323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300172708541100