Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031016.1 Length=40273 Score E Sequences producing significant alignments: (Bits) Value seq18 230 6e-56 >seq18 Length=80077792 Score = 230 bits (254), Expect = 6e-56 Identities = 726/1103 (66%), Gaps = 39/1103 (4%) Strand=Plus/Plus Query 22638 TAAATCGCATATCGCAAAGAGTCAAGTACATCATCGAATAGTTTTATTGGTTCTCCtttt 22697 ||||||||||| |||| | || || ||||| || ||| | ||| || ||| | Sbjct 30098933 TAAATCGCATAACGCACCGCATCCAGCACATCGTCATTCTCTTTCACTGGCTCGCCTGTC 30098992 Query 22698 ttttCATCCCAAACATATTGATAAATCTCAT-TAGGAAATTTATCAACTTTATCTCTACA 22756 ||||| | ||| | ||||| || | ||||| | ||| || | | ||| | |||| Sbjct 30098993 TTTTCGTTCCATATGTATTGGTAGACCTCATCTTTGAACTTGCTGACCTTATTTGATACA 30099052 Query 22757 AACAAACAA---CTTATCTTTCTTAAATCTACGAGCGACTGCTTCAACACCAGTTAAACG 22813 | |||| || | | ||||| | | | || ||| |||| | ||||| || Sbjct 30099053 A-CAAAAAAGCGCCCAGCTTTCATCAGCTTG---GCTACTTCTTCGATACCAGACAAGAC 30099108 Query 22814 TGCTTTGTCTCCATTAAACG-CTTCAATGTGTTCTCGTTTAAACCTATCAACATGTTCAG 22872 ||||||| | ||||| | ||||| | || |||| | ||| ||| |||| ||||||| Sbjct 30099109 CGCTTTGTTAGCGTTAAATGTCTTCAGT-TGCTCTCTCTGAAATCTAGCAACGTGTTCAG 30099167 Query 22873 GGCGAGCAGAATCACAATAGAAGGGGACTCTTGAACCATAACGTTCTTGAATACCTTTAG 22932 | || || ||| | || | | | ||| ||||| |||| || || |||||| Sbjct 30099168 GTCGTGCGCTATCTGCCCAAAACGTAA-TATTG--CCATATCGTTTTTTGATTTCTTTAG 30099224 Query 22933 CTATATCTACCCAATAGTCAATTTCTTCATGTTGTTTTGCGTGCTCTTCGATTAAATAAG 22992 | | ||||||||| ||||||| |||| | ||| | ||||| || || | | |||| Sbjct 30099225 CAAGGTCTACCCAAAAGTCAATCTCTTTGTATTGATGAGCGTGTTCCTCTAAGATATAAA 30099284 Query 22993 CTGTTCCATCATCCGTTTCTCCGATAACAACAATTGAACCCCAGTGTTCATACCCCCAGT 23052 ||| || || |||||||||| ||| ||||| || || |||||||||||||||||| Sbjct 30099285 CTGAACCGTCTGAGGTTTCTCCGACAACTACAATAGAGCCAAAGTGTTCATACCCCCAGT 30099344 Query 23053 CAACACCGCAATAGAATGTTGATA---GTTTAGGTAAGTCTTTGGATTGTATATAGTGTT 23109 ||||||| ||||| | | | || || |||| || | | | | ||| | Sbjct 30099345 CAACACCAGCATAGACTTTAGTTATATCTTCTGGTACGT-TATCCA-CAAACATA----T 30099398 Query 23110 TGTTGCTATCAAAGTCTTGATAAACCACACCGTCAGCAGATACCCAAAGTCCTTTTATAT 23169 | | ||| ||| || |||| || || || ||| ||| |||| | || || | Sbjct 30099399 TCTCGCT---AAAATCACGATATACAACGCCCTCACCAGTCGCCCACAAACCAAGGATGT 30099455 Query 23170 CACGGTCATAAAACATACCGCTTGGCGTTGCTGCCTTGATATTTTCACGGTACCTCTCAG 23229 | ||||||||||| | ||| ||| || || |||||||||||| ||||| || |||| Sbjct 30099456 CTCGGTCATAAAATACACCAGCTGGTGTGGCATTCTTGATATTTTCGCGGTATCTGTCAG 30099515 Query 23230 ATAAGAAAGTATTATCATCTAATTCAAAATGAAAAGC-CTTAACATTT--TCGTTAGGCT 23286 | | ||| ||||||||||||| | |||||||| | | | ||| | ||| || | Sbjct 30099516 ACATGAATGTATTATCATCTAGCTTGAAATGAAAGTCTATGATCATATCGTCGCCAGAGT 30099575 Query 23287 TATCTATATATTCTTTCTTTAACCAAT-GCTCAGGATTATCAGGGTTAGTATCTGCTAGA 23345 | ||||| || | | ||| | | || ||| | || |||||| |||| | | Sbjct 30099576 T---GATATAATCCCGTCTGAGCCAGTGGGTCGGGA-TGTCTGGGTTACTATCCCAAACA 30099631 Query 23346 ATTCTTGCTCCATTCCCCGAACAACGAGAAACAATTTCACCAAATACTTCTTGTTTAGCA 23405 || | ||| || | ||||||||||| || | ||||| || |||| || || || Sbjct 30099632 ATCCGTGCACCCTCTCCCGAACAACGTGAGATGATTTCTTTGAACACTTGTTCATTGGCC 30099691 Query 23406 AGAGACGCTTCATTGACATAAGCACCATAAGCAGTCATACCACGAATAGCACCAACTCCA 23465 | || || || || ||||| || ||| |||| || | |||||| ||| | | | Sbjct 30099692 AACGATGCCTCGTTCACATAGGCTCCAAAAGCTGTGAAACCACG---AGCTCGTTTTAAA 30099748 Query 23466 CC-GATATT--TCCAGTATATGCTTGAACTACTTTTACACCAAATAATTTAAAGTTATTG 23522 || || ||| |||||||| |||||| || || || || | | |||| | Sbjct 30099749 CCTGAAATTGAACCAGTATAAACTTGAATAACCTTGACTCCGCAAAGAGTAAACGCTCCG 30099808 Query 23523 TGCTTATCAAACTTGGGCTCTATATTGTACATGTTATAAAGTTCTTGGAGGATGTTCTTG 23582 || || ||| | || ||||| |||| |||||||||| |||||||||| || || || Sbjct 30099809 TGTTTGTCATATTTTGGCTCAATATCAAACATGTTATAGAGTTCTTGGATAATATTATTT 30099868 Query 23583 TTGATTGTATTTGATGAAACACCAGCCAATATATACATAGGCTCTTTCACACCTTCTTCA 23642 | || | | |||| || |||||||| |||||||| || || | | || | | Sbjct 30099869 TGTATCGAAGTTGAAGACGTCCCAGCCAAAATATACATCGGTTCATCAATGTCTAACTTA 30099928 Query 23643 TCAGCTATTTTACGAACACGCCTTAATTCAAACAAGAATAAATCATTATTCATCTTTGTT 23702 ||||||||| | | ||| | | |||| || ||| | |||||||| || Sbjct 30099929 TCAGCTATTGTTCTAACTCTATCAATTTCATTCAGGAAGACCATATTATTCAAAACAGTC 30099988 Query 23703 TTACCTGAACGCTTAGCACCATG 23725 |||||||||||||| |||||||| Sbjct 30099989 TTACCTGAACGCTTTGCACCATG 30100011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128751961776750