Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031028.1 Length=45285 Score E Sequences producing significant alignments: (Bits) Value seq18 104 7e-18 >seq18 Length=80077792 Score = 104 bits (114), Expect = 7e-18 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 2645 CCAAGCTGAGCCTGCAAACGGTGGCCTCGGTCTACCACGTGAACCCCACGATGGTGGGTC 2704 ||||||||||| || ||||| ||| || |||||||| || ||||| ||||||||| Sbjct 46294054 CCAAGCTGAGCTTGGCGACGGTTGCCAGCGTGTACCACGTCAATCCCACCATGGTGGGTT 46293995 Query 2705 TGCTGGACAACGCGAACTACTCGAACGTGCGCGAGTTCCG 2744 ||||||| || |||||||||||||| ||||||||||| || Sbjct 46293994 TGCTGGATAATGCGAACTACTCGAATGTGCGCGAGTTTCG 46293955 Score = 100 bits (110), Expect = 8e-17 Identities = 211/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Minus Query 4764 CCGCGCGATCACCAAGGTCTCGACCGCGACCGAGCTCTCGGCTGACGGCATCGTGATCCA 4823 |||||| |||| || ||| | ||| ||||| || |||||||||||| || ||| | Sbjct 46292037 CCGCGCTATCAACATGGTGGGCAACGCCACCGACTTCGAGGCTGACGGCATTGTCATCAA 46291978 Query 4824 C-CCGCTGGACTACCAGAAGTTCCGCCTCACCAAGGACGGCAACGGACAGTACTTCGGCG 4882 | ||||| ||||| ||||| | ||||| | || ||| |||| || ||||| || || | Sbjct 46291977 CACCGCT-GACTATGAGAAGCTGCGCCTGATGAAAGACAGCAATGGTCAGTATTTGGGTG 46291919 Query 4883 GTGGCTTCTTCGAGGGCCAGTACGGCAACGGTGGTGGTCTCGCCGCACAGCCTCCGCTCT 4942 | || | ||| |||| |||||||| | || || |||| | |||| || || | Sbjct 46291918 GCGGTATTTTCCAGGGTCAGTACGGTCAGGGCGGCATTCTCATC---AAGCCACCACTGT 46291862 Query 4943 GGGGCCTGCGCACCATCGTCACCCCGAA---CGTGGCGGTCGGCAAGCCGCTCGTCGGCG 4999 |||||||| ||| |||| | |||| |||| || |||| || | || |||| Sbjct 46291861 GGGGCCTGAACACTGTCGTGA---CGAATGCCGTGCCGAAGGGCACCGCGTTTGTTGGCG 46291805 Query 5000 CGTTCCGCCAGGCAACGACCCTCTACCGCAAGGGTGGAGTCCGGGTCGACGCCACCAACA 5059 ||| || || |||| || || |||||||| |||| || || ||| | |||| Sbjct 46291804 CGTGGCGTATGGGTGCGACGATCCTGCGTAAGGGTGGCATCCGCGTGGATGCCGCGAACA 46291745 Query 5060 GCCACGTGGA 5069 | |||| || Sbjct 46291744 CCAACGTTGA 46291735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144790357015350