Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq18 111 9e-20 >seq18 Length=80077792 Score = 111 bits (122), Expect = 9e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44120 GACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGAC 44179 ||||||||||| | || || || |||||| | |||||||||||||| ||| ||| || Sbjct 69190664 GACGCGGACCCCGAGGTTGATGTGATCATCATCGCCCGCGGCGGCGGTTCGGTGGAGGAT 69190723 Query 44180 CTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCG-CGTTCGCGTCTGCAACCCCGGT 44238 || || |||| ||||| || || ||| ||||| | | |||| | || |||||||| Sbjct 69190724 CTGCTGCCGTTTTCCGAGGAAGCGCTGCAACGCGCGGTCTCACGCGCCCGC-ACCCCGGT 69190782 Query 44239 TGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCG 44298 || || |||||||| |||||| ||| ||| | || ||| || | ||||| || Sbjct 69190783 GGTATCGGCGATTGGGCACGAGCCGGATAACCCGGTGCTGGACAATGTAGCTGACCTGCG 69190842 Query 44299 AGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGTGCAC 44347 || || || || ||||| || || ||||| || || || || ||||| Sbjct 69190843 CGCCGCCACCCCCACGGACGCGGCAAAACGCGTGGTTCCGGA--TGCAC 69190889 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/188 (71%), Gaps = 12/188 (6%) Strand=Plus/Minus Query 48464 GCCATGGCCGAAGAGAAGGGCGTCGACCTCAAGCATTCGCCGAAGTGGCGGGAACAGCTG 48523 ||| |||| |||||| ||| || || | |||||||||||||||||| | ||| | Sbjct 70158338 GCCCTGGCTGAAGAGCTGGGTGTGGATTTGTCGCATTCGCCGAAGTGGCGTCAGCAGTTA 70158279 Query 48524 GGCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGA 48583 || ||| | || || || ||||| ||||| || |||| || |||||| ||| Sbjct 70158278 GGTTCGTTGGGTGGTGGTAACCATTTCATTGAATTGTG------TTTGGACGAGC-AGGA 70158226 Query 48584 CCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAACAAGATCGCG 48643 ||| | | ||| | |||||||| ||||| ||||||||| ||||||||||| || Sbjct 70158225 CCGCG-----TGTGGATGTTCCTGCACTCCGGTTCCCGCGGTGTGGGCAACAAGATTGCA 70158171 Query 48644 CAGAAGCA 48651 ||||||| Sbjct 70158170 AAGAAGCA 70158163 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72749 TGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGAGAAC 72808 ||| | |||| ||||||| | | ||| |||||| | ||||| | | || || ||| Sbjct 63388450 TGGGAAGACGGCGAGGCGATGTACCTTACCTGCAATGTGTGGCGTCAAGCAGCGGAAAAC 63388391 Query 72809 GTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGCCTCAAGCAGCGC 72868 || | ||||| ||||| ||||||||||||||||| || |||||||| || ||||||| Sbjct 63388390 GTTGCTGAGTCCCTGTCAAAGGGCATGCGCGTCATTGTGCAGGGTCGACTGCGGCAGCGC 63388331 Query 72869 AGCTACGA 72876 |||||| Sbjct 63388330 TCCTACGA 63388323 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48170 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 48229 |||||||| || | || || || || |||||||| || || ||| ||| ||| || Sbjct 74070676 CTGCCGTTTATTTACCCGCATGTTGCGCTCATGCCCGACGCCCACACCGGGTTAGGGTCG 74070735 Query 48230 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 48289 | || || || ||| | ||| | || |||||||| || ||||| || ||||| ||| Sbjct 74070736 TCGGTGGGAACCGTGTTCGGCACCATTGATGCCGTGATTCCCGCCGCCGTGGGCGTTGAC 74070795 Query 48290 ATCGGCTGCGGCATGATCGGCGTG 48313 ||||| ||||||||||| | |||| Sbjct 74070796 ATCGGATGCGGCATGATTGCCGTG 74070819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299670308694175