Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq25 385 7e-102 seq13 100 4e-16 >seq25 Length=32766887 Score = 385 bits (426), Expect = 7e-102 Identities = 1268/1960 (65%), Gaps = 21/1960 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || ||||||| | ||| || | | | | ||||| ||||| || Sbjct 10519918 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10519977 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || ||||| |||| || || || ||||| || || ||||| || | || Sbjct 10519978 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10520037 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 10520038 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 10520097 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || ||| | | ||| || || || || ||||| |||||||| Sbjct 10520098 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10520157 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || || || || || || | || || Sbjct 10520158 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCC 10520217 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || || || || || |||| | || || || || || || |||| || Sbjct 10520218 TCGTACGTCTCGTAGGGGCCGAGCTCTG---CGGCGAGCTCGCAGCTGGCCTCCAGGGCG 10520274 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 ||| || || || ||||| |||| | ||||| || ||||| ||| || || Sbjct 10520275 GCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAAA 10520334 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || | | | || || ||||| || || | ||||| || || || || || || || Sbjct 10520335 GGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTG 10520394 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| |||||| | | ||||| |||| || || || || ||||| || || || Sbjct 10520395 TGGCGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTG 10520454 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 ||||| ||| | || | ||| || ||| || || || || || | | Sbjct 10520455 TTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGC 10520514 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 ||| | || ||||||| | || || || || || || || || || ||||| | Sbjct 10520515 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCC 10520574 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| || | | | ||| || || || || || || ||||| |||||||| || Sbjct 10520575 TTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTC 10520634 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| | ||||| | |||||| || || || | || ||||||||||| Sbjct 10520635 TGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCG 10520694 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCG 77893 |||| || ||||| || | | ||||| | || || || | || ||| || Sbjct 10520695 GTCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTCACCACCCTTTTCACTCT 10520753 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || || | ||||||| || || ||| || || || |||||||| || |||| Sbjct 10520754 CCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAG 10520813 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 ||||| || || | || |||||||| |||||||| | || |||| ||||| Sbjct 10520814 CCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCAT 10520873 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || || ||||| ||||| | || || || |||| || ||| || || || ||||| Sbjct 10520874 GAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCC 10520933 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||| ||||| || || || || || || | | || | |||||||| || ||||| || Sbjct 10520934 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGATACAT 10520993 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || |||| || || || ||||| || | || | |||||||| || || Sbjct 10520994 GGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTA 10521053 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||||||| ||| || | | ||||| || | || || || || | || || ||||| Sbjct 10521054 AACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCC 10521113 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | || || || | | | || || || || || ||| || || || || Sbjct 10521114 CGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGC 10521173 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 ||| | |||| || |||||||| || || || ||||| ||| ||||| || || || Sbjct 10521174 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 10521233 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || || |||| || | | || || || || || | |||||||| || || || Sbjct 10521234 GCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 10521293 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||||| || || || || || ||||| || || | || | || ||||| | || Sbjct 10521294 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTG 10521353 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 || || |||| || | ||| | ||| ||||| |||| || || || || || Sbjct 10521354 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGAT 10521413 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 |||| || ||| || |||| ||| || || || || ||||||| || || ||||| Sbjct 10521414 CTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCT 10521473 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCAT-GACAG 78672 |||||||| || || || || || |||| || | || || || | | | | Sbjct 10521474 GTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGTCTG 10521533 Query 78673 TAGTTGAAATAATAGGAGATCGTACACCATTTTT---AGGATTAACATAGTTAAATAAAT 78729 | || || || ||||| | | || || ||| || |||||| || | | Sbjct 10521534 CT-TGGAGATCATGGGAGAGTGG---CGTTTGTTCAGAGGGTTGACATAGGCGAACAGGT 10521589 Query 78730 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTC 78789 | ||||| || || || || | || || || ||||| || || || || || || || | Sbjct 10521590 CCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCC 10521649 Query 78790 TTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCG 78849 | || || || || || || || || |||| || || ||||| || || || || | Sbjct 10521650 TCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCTG 10521709 Query 78850 CTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909 ||| | |||| ||| | || ||||| || | || | || || || || ||||||| Sbjct 10521710 CTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGG 10521769 Query 78910 CGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTA-ATACGA 78968 ||| | | ||||| ||||| || | ||||| || || || || |||| || || Sbjct 10521770 TGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGG 10521828 Query 78969 GATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || |||||||||||||| || || ||||| || |||| Sbjct 10521829 GAGGTGATTTTATCAAACATGACGCGCTCCTGGCGCCCAT 10521868 >seq13 Length=27080333 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || || || || | || ||||| ||||| || ||||| || || ||||| || ||| Sbjct 15280492 GTGCCAGCGTTGAACAGGGTAGGAGAGGCATGAGTGAACCACTTCTCTGAAAGCAGGTTG 15280551 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||| ||||| || ||||| | || |||||| || || || || | ||||| | Sbjct 15280552 TATGTTTCAACAGCTGCCTCAATGTCTCCTTTATGAATCCCGACTGCCACTCTCATCAGC 15280611 Query 78519 ATATGCTGAGGTCTTTCA 78536 || ||||| ||||| ||| Sbjct 15280612 ATGTGCTGGGGTCTCTCA 15280629 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || | ||||| |||||||||||||| |||||| |||| | Sbjct 15278744 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 15278803 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | |||||| || || || |||| || || || || |||| || ||||| || Sbjct 15278804 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGATG 15278863 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 15278864 GCGTACCAGA 15278873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668582916000