Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq25 407 2e-108 seq13 109 8e-19 >seq25 Length=32766887 Score = 407 bits (450), Expect = 2e-108 Identities = 1267/1949 (65%), Gaps = 17/1949 (1%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || ||||||| | ||| || | | | | ||||| ||||| || Sbjct 10519918 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10519977 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || ||||| |||| || || || ||||| || || ||||| || | || Sbjct 10519978 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10520037 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 10520038 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 10520097 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || ||| | | ||| || || || || ||||| |||||||| Sbjct 10520098 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10520157 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | || ||||| | ||||| || || || || ||||| | || || Sbjct 10520158 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCC 10520217 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || | | || || ||||| || ||||| | || || Sbjct 10520218 TCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCG 10520277 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 | || || || ||||| |||| | || || || ||||| |||| || ||||| Sbjct 10520278 TGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAAAGGG 10520337 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 | | | || || || || || || || ||||| || || || || || || || || Sbjct 10520338 TGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGG 10520397 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| |||||| | || ||||| |||| ||||| || || || || || || || ||| Sbjct 10520398 CGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTG 10520457 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 || ||| | || | ||| || ||| || || || || || | | ||| Sbjct 10520458 AGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCT 10520517 Query 76256 ATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAG 76310 | || |||| || || || || || || || || || ||||| ||||| | | | Sbjct 10520518 GGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTG 10520577 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| || | | | ||||||||| || || || |||||||| || || || || | Sbjct 10520578 C--TGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 10520635 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | ||||||||||| |||| || | |||||| || || | | || || || ||||| Sbjct 10520636 GCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGG 10520695 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATTATAGATTTG--TATC 76487 |||| || ||||| || | | ||||| | || || || | | ||| | || Sbjct 10520696 TCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTCACCACCCTTTTCACTCTC 10520754 Query 76488 GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCA 76547 |||| ||| |||||| || || | | || || || |||||||| || |||| Sbjct 10520755 CCTTCCTTCT--CATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA 10520812 Query 76548 AACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCA 76607 |||||||| || | ||||||||||| ||||| || | || || | |||| Sbjct 10520813 GCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCA 10520872 Query 76608 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTC 76667 | || || ||||| ||||| | || || || |||| || ||| | || || |||| Sbjct 10520873 TGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTC 10520932 Query 76668 CTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 76727 |||| ||||| || || || ||||| || | | || | |||||||| || ||||| | Sbjct 10520933 CTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGATACA 10520992 Query 76728 TCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTAT 76787 | || | | || |||| || || || ||||| || | || | || ||||| || | Sbjct 10520993 TGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGT 10521052 Query 76788 AAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTC 76847 ||||||||| ||| || | | ||||| || | || || || || | || || |||| Sbjct 10521053 AAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTC 10521112 Query 76848 CACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 | | || || || | | | ||| || || || || || || || || | Sbjct 10521113 CCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCG 10521172 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 | || | |||| ||||| |||||||| || || || || ||| ||||| || || | Sbjct 10521173 CGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGA 10521232 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 | || || |||| || | | || || || || || | || ||||| || || | Sbjct 10521233 AGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGG 10521292 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 ||||||| || || || || || ||||| || || | | || || || || | | Sbjct 10521293 TGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGT 10521352 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | || || || | || | ||| | ||| ||||| ||||| || | || || | Sbjct 10521353 GGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGA 10521412 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 | |||| || ||| || |||| ||| || || || || ||||||| || || |||| Sbjct 10521413 TCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTC 10521472 Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA-TGACA 77266 | |||||||| || || || || |||||| | || | || || || | | | Sbjct 10521473 TGTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGTCT 10521532 Query 77267 GTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCT 77326 | | || || || ||||| | | || ||| || |||||| || | ||| Sbjct 10521533 G-CTTGGAGATCATGGGAGAGTGGCGTTTGTTCAGAGGGTTGACATAGGCGAACAGGTCC 10521591 Query 77327 TCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTA 77386 ||||| || ||||| || | || || || ||||| || || || || ||||| || || Sbjct 10521592 TCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTC 10521651 Query 77387 GCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCT 77446 || || || || || ||||| || |||| || || |||||| || || || || ||| Sbjct 10521652 GCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCTGCT 10521711 Query 77447 AAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCT 77506 | || |||| || | || || || ||| | || | || || || || ||||||| Sbjct 10521712 AGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTG 10521771 Query 77507 ATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT-AATACGAGA 77565 || | ||||| ||||| || | ||||| || || || || |||| || || || Sbjct 10521772 ATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGA 10521830 Query 77566 TGTGATTTTATCAAACATGACATTCTCCT 77594 |||||||||||||||||||| ||||| Sbjct 10521831 GGTGATTTTATCAAACATGACGCGCTCCT 10521859 >seq13 Length=27080333 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || |||| |||||||| |||||||||||||| || || ||||| || ||| Sbjct 15280492 GTGCCAGCGTTGAACAGGGTAGGAGAGGCATGAGTGAACCACTTCTCTGAAAGCAGGTTG 15280551 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||| | |||| || || || | || |||||| || || || || | ||||| | Sbjct 15280552 TATGTTTCAACAGCTGCCTCAATGTCTCCTTTATGAATCCCGACTGCCACTCTCATCAGC 15280611 Query 77114 ATATGCTGAGGTC 77126 || ||||| |||| Sbjct 15280612 ATGTGCTGGGGTC 15280624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934177208000