Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq18 100 2e-16 >seq18 Length=80077792 Score = 100 bits (110), Expect = 2e-16 Identities = 207/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 782 ACACCCTACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTC-GAAGGATGATCG 840 ||||||||||||||||| | ||| |||||| || || | || | || || || || Sbjct 64496970 ACACCCTACGAAGACCTCCTCCGCACCATCCTTGA-ACACGGAACCCACAAAGACGACCG 64497028 Query 841 CACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGA-CCTCACCGAGG 899 ||||||||||||||| ||| |||||| || | || | || | ||| | | Sbjct 64497029 CACCGGCACCGGCACAACCAGCCTGTTCGGGCAGCAAATCCGCTTTGATCTTCAGC-ACT 64497087 Query 900 GCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGT 959 |||||| ||| ||||||| || || ||| |||| || |||| | || || | | Sbjct 64497088 CCTTCCCACTGATCACCACCAAAAAAGTGCACGTCAAGTCCGTTGTGGGGGAGCTGTTAT 64497147 Query 960 GGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGG 1019 ||||||| | ||||| | ||| | ||| |||| ||||| ||||||| |||| Sbjct 64497148 GGTTCCTGCGCGGCGATTCAAACATCTCCTTCCTCCACGAACACGGCATCACCATTTGGG 64497207 Query 1020 ACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACT 1079 |||| ||||| | ||| ||| | ||||| || || ||||| | ||| ||||| || Sbjct 64497208 ACGAATGGGCATCCCCCGACGGCGAACTCGGCCCCGTTTACGGTGTGCAATGGCGCAGCT 64497267 Query 1080 GGC 1082 ||| Sbjct 64497268 GGC 64497270 Score = 93.3 bits (102), Expect = 3e-14 Identities = 171/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCA-AGTTCGGCGCCCAGCTGCGGTACGACCTCAC 894 || ||||| |||||||||||| | || | || |||| | || |||| | ||| || Sbjct 59895457 GACCGCACGGGCACCGGCACGTTCGGCGTATTTGGGCGGC-AGATGCGCTTCGATCTGCG 59895399 Query 895 CGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACT 954 | ||||| | | | || || ||||| || |||||||||||||| ||| ||| || Sbjct 59895398 TAACTCTTTCCCCCAGATTACTACCAAGCGTGTGCACTTCAAATCGGTGGCGGTCGAGCT 59895339 Query 955 TCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCAT 1014 |||||||||||| | ||| | | ||| | ||| | || |||||| || || Sbjct 59895338 TCTGTGGTTCCTGCGCGGCTCCTCAAACATACGTTGGCTGCAGGAACGCGGCGTGACTAT 59895279 Query 1015 CTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCG 1074 ||||| || ||||| |||| || | ||||| || |||||||| | ||||||||| Sbjct 59895278 ATGGGATGAATGGGCTGACGAAAATGGTGATCTCGGCCCGGTCTACGGGGTGCAGTGGCG 59895219 Query 1075 GCACTGGC 1082 ||||| Sbjct 59895218 CTCCTGGC 59895211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296131109772525