Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq18 154 2e-32 >seq18 Length=80077792 Score = 154 bits (170), Expect = 2e-32 Identities = 521/797 (65%), Gaps = 27/797 (3%) Strand=Plus/Plus Query 53688 AGTCGATGATCGGCCCGATCCAGCTCCAGCTGCGTTACCAGGGCATCCTGCGTAACGTCC 53747 |||| ||||| || || |||||||| |||||||||| ||||| || |||| ||||| | Sbjct 39945127 AGTCCATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAACGTTC 39945186 Query 53748 TGCTGGAGGACACGCTGACCCCCGGCGTGCCGATCCAGTACGACGTCCTGGACGACCTCG 53807 | |||| || | || || || || ||| | ||||||||||| || ||| | | Sbjct 39945187 TTTTGGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAGTGGG 39945246 Query 53808 GCCAGGCCTACATGCTGCACGGCAACGAGGGCGAGATCCGCATCACCCCCTTCGAGGGCA 53867 ||||||| || || ||||| || || || || | ||| || |||| | Sbjct 39945247 GCCAGGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAGGCAA 39945306 Query 53868 AGCGTATCGAGGTCCAGCTGTTCCGCATCGCGAGCTTCCCGCAGATCAAGAAGGAAGACC 53927 ||||| | |||| | ||||||||||| || |||||| || || || || || Sbjct 39945307 AGCGTGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAGGATG 39945366 Query 53928 TGT--ACTACCTCCGCAGCAACATCGTGGAGTACACGCAGGACATGACCAAGCAGGCCAT 53985 | | | || |||| || | || ||||| | ||||| | | || | || || Sbjct 39945367 TTTGGATGGCCCGCGCA--AATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAGCTAT 39945424 Query 53986 CATGCGCCAGGAGGACTCGCGCCTCGTGACGCTGCTGGAGGCTGC-AGCGGTCAGCTACC 54044 ||| | ||| |||||||| || || || ||| |||| | ||| | ||| | | Sbjct 39945425 TATGAAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTATTTCGCAGTTCCA 39945484 Query 54045 GCGTCGTGGACAGCTCGGCTCAGC-CGGGC-GTCGGCGCACTGCCCAACGAGATCACCAT 54102 | | ||| | ||| | || || | | || || |||| ||||| || ||||| Sbjct 39945485 GGCTA----ACAACCCGGAT--GCTCGTACTGGTGGTGCTTTGCCGAACGAAATTACCAT 39945538 Query 54103 CGCCGGTTCACACCTGATGCCGGAT---GATCTCTACACGGCGGTGACCTACACCG---A 54156 ||| ||| || || | | | ||||| || | || || | || ||| | Sbjct 39945539 CGC---TTCCGACTACATTACCGCTAACGATCTGTATTCCGCTGTTTC-TATCCCGGATA 39945594 Query 54157 CCAGCGTCAGCTGGACAGCTCGCGCCTGCTGGCGAACCCGCAGGAGTACCGCGACCTGTA 54216 || ||||||||||| || ||| | ||| || | | || ||||| ||| | || Sbjct 39945595 CC--CGTCAGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTTCTA 39945652 Query 54217 CCGGTGGGACATCAACACGACCGGTTGGGCCTTCAAGGACTCGGTGGTCGCTGGTGAGCG 54276 ||| ||||| |||||| || |||||||| ||||| || || || |||||||| Sbjct 39945653 CCGCTGGGAAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGAAAC 39945712 Query 54277 CATCGTCCAGTTCGGCGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCACCG 54335 ||| | ||||| || |||||||| || || || |||| ||| ||| ||||| Sbjct 39945713 TATCACCACTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCACAA 39945771 Query 54336 TCTACCTGACCCCGGAGCCCGAGTTCCTCGGCGTCTTCCCGGTCATGTACTCCCTCGATG 54395 | || || || || | || || ||||| || || | || || |||||||| || |||| Sbjct 39945772 TGTATCTTACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGGATG 39945831 Query 54396 TCGAGGAGGACAACAAGGTGGAGCGGTTCAACAAGGGCTGGGTGATGGACGAGCTGGTCG 54455 | ||||| |||||||||| || ||| | | || ||||| ||||| || || ||| Sbjct 39945832 TGGAGGAAAACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTATCG 39945891 Query 54456 GCATGGCCGTGCTCAAC 54472 ||||||| | |||||| Sbjct 39945892 GCATGGCTATTCTCAAC 39945908 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 49357 CGGGCCATCTCGGCGCGAGTTAACCAGAACTACGACGGTTGGCCGTCCGAAGAGCTGAAG 49416 ||||| || || | ||||| |||||||||| || | |||||||| || || || Sbjct 39942172 CGGGCTATTTCTTCCCGAGTGAACCAGAACTTTGATGCGTGGCCGTCTAGTGAACTTAAA 39942231 Query 49417 AAGGCCGCGCACACCTTCATCGGAAAGCCGGTCTTTGTCAACCACGAGAACTACGACCCG 49476 ||||| | ||||| | || ||||| || || || ||||| | || | ||||| Sbjct 39942232 AAGGCTTACAAAACCTTTTTAGGCAAGCCTGTTTTCGTTAACCATGTTAATGATGACCCC 39942291 Query 49477 AAGAAGGCTAGGGGAGTTGTTGTCGCCGCTCGTTACGTCGAGAACGGCAACGACAAGTTC 49536 | ||| || | || |||||||| || ||||| || || |||| || || |||| | Sbjct 39942292 ACGAAAGCCCGTGGCGTTGTTGTTGCTTGTCGTTTTGTTGAAGACGGTAAAGATAAGTAC 39942351 Query 49537 ATCGAGGTCATTCAGGAAATCGACGC 49562 ||||| |||||||||||| |||| || Sbjct 39942352 ATCGAAGTCATTCAGGAAGTCGATGC 39942377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515023839055000