Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031094.1 Length=33105 Score E Sequences producing significant alignments: (Bits) Value seq18 154 3e-33 >seq18 Length=80077792 Score = 154 bits (170), Expect = 3e-33 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27434 AATATCGCAGTAGCATCTTTTAGCCTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGT 27493 ||| | ||||| || |||||| ||||| || ||||||| |||||| | ||||| Sbjct 59386095 AATGTAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGC 59386036 Query 27494 GAGCGTGAAGCAGATTTTATCAATTGCGTTATCTGGCGCCAGCAAGCTGAAAATTTGGCT 27553 || ||||| || |||||||||||| ||| || ||||| || || ||||||||| | ||| Sbjct 59386035 GAACGTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCT 59385976 Query 27554 AATTGGGCTAAAAAAGGCGCATTGATTGGAATTACTGGACGTATTCAGACCCGTAGCTAT 27613 || ||||||||||||||| | | || || || || || ||||| ||||| ||||| || Sbjct 59385975 AACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTAC 59385916 Query 27614 GAAAACCAACAAGGGCAACGAGT 27636 || ||||| ||||| ||||| || Sbjct 59385915 GATAACCAGCAAGGACAACGTGT 59385893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105814368586350