Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13 113 1e-19 seq18 109 1e-18 seq16 96.9 8e-15 >seq13 Length=27080333 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || || || ||||| ||||||||||| |||| | || Sbjct 11060525 CCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 11060584 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | ||| || Sbjct 11060585 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 11060644 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || ||||| |||| | | |||| || || || || Sbjct 11060645 CTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAG 11060704 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| ||||| ||||| || |||| ||||| Sbjct 11060705 GGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11060746 Score = 107 bits (118), Expect = 4e-18 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG- 151957 || ||||| || ||||| || ||||| ||||| |||| | || | |||||||| || Sbjct 11062552 AGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 11062611 Query 151958 -GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||||| ||||| ||||| |||||||||||||| | | ||| || ||||| || || | Sbjct 11062612 TGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGA 11062669 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || || |||| | | | || ||| ||| || || || || || |||| Sbjct 11062670 TCTTGGCCTTAACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTTT 11062726 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| ||||| || ||||| |||| |||||| || Sbjct 11062727 TGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 11062760 >seq18 Length=80077792 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || ||||| || ||||| ||||| |||| | || Sbjct 51870051 CCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGT 51870110 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || || ||||| |||||||||||||| | | ||| || Sbjct 51870111 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 51870170 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || | || ||||| |||| | | |||| ||| ||| || || Sbjct 51870171 CTCCTTATCCTGGAGCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTC 51870227 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| ||||| ||||||| |||||| Sbjct 51870228 CAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51870272 >seq16 Length=24388307 Score = 96.9 bits (106), Expect = 8e-15 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || |||| |||||| || | | || Sbjct 2613267 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGT 2613208 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | || || Sbjct 2613207 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 2613148 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | | || ||| ||| || || Sbjct 2613147 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 2613091 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || ||||| || |||||||| | |||||| || Sbjct 2613090 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2613043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820430416775