Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_031915.1 Length=37395 Score E Sequences producing significant alignments: (Bits) Value seq18 185 2e-42 >seq18 Length=80077792 Score = 185 bits (204), Expect = 2e-42 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28934 ACACGTTGACCTTGCTGGTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATA 28993 |||||||| |||||||||||||| || ||||| || || || ||||| | |||||| Sbjct 59385893 ACACGTTGTCCTTGCTGGTTATCGTAACTACGAGTCTGGATACGGCCTGTGATCCCGATA 59385952 Query 28994 AGAGAGCCTTTTTTAGCCCAATTAACAAGATTTTCAGCTGACTGTCTCCAGATAACGCAA 29053 |||||||||||||||||||| ||| ||||||||||||| || | ||| || ||| | Sbjct 59385953 AGAGAGCCTTTTTTAGCCCAGTTAGCAAGATTTTCAGCCTGTTGACGCCACATCACGACA 59386012 Query 29054 TTGATAAAATCAGCCTCACGCTCTCCAGCCTCGTTCTTAAATGGACGGTTTACAGCAAGA 29113 |||||||||||||||||||| || ||| | ||||||| | ||||||||| |||||| Sbjct 59386013 TTGATAAAATCAGCCTCACGTTCGCCATTTTGACTCTTAAACGTACGGTTTACTGCAAGA 59386072 Query 29114 GTAAACGTAGCAACCGCAATATTAGATTGCGTGTA 29148 ||||| || ||||| || | ||| ||| | || || Sbjct 59386073 GTAAAAGTCGCAACTGCTACATTTGATGGGGTATA 59386107 Score = 181 bits (200), Expect = 3e-41 Identities = 264/370 (71%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 176 CTTTTACAATCGGCTGAAAAAGAGTAACATTTCCTTTTAATTTGCGGTAATTTTCAATGA 235 |||||| ||| || | |||||| || ||| ||||||| ||| | || || ||||| | Sbjct 50176735 CTTTTAAAATTGGTTTAAAAAGTAGAATATTCCCTTTTACTTTTTGATAGTTCTCAATTA 50176676 Query 236 GAGATTGAAAAGTAAATGCGATGTACCCGAGATAGATTGAGTGCAAGAATACAAAACCTG 295 | ||||| ||||||||| | | ||| |||| ||| || || | || || | ||| || | Sbjct 50176675 GCGATTGGAAAGTAAATACTAGGTATCCGATATAAATAGAATACAGAAACATAAACCCAG 50176616 Query 296 TCTTTTCAGGCAACAAAACGGACGCCGGAATGAGGATCATCAGTAA---GAGAACCCCTG 352 | ||||||||||||||||| ||| |||||| | || | |||||| | || |||| Sbjct 50176615 TTTTTTCAGGCAACAAAACAGACATCGGAATCA--AT-AACAGTAACATAAAAATCCCTA 50176559 Query 353 AAATCTTACGAAGGAGCCCGTTAATGCCGATTTTGCTCTTGTACTCGATGTCAGGATTGA 412 | | || |||| | || || || || ||| | ||||| ||||| | |||||||| | Sbjct 50176558 AGACTTTTCGAATTAATCCATTGATTCCAATTCTACTCTTATACTCAACATCAGGATTTA 50176499 Query 413 TAATCGCCGCAATCGTCCCTGTGACAAAATCAATGATTTCCATTGAGACAATCAGTGTTA 472 ||| ||||||| || |||| ||||||||| |||||||| |||||| | | || Sbjct 50176498 CAATGGCCGCAAATGTTCCTGATGCAAAATCAACAATTTCCATGATGACAATTAACGCTA 50176439 Query 473 GAGCGTACAAGACCAAACCATCTTCAGTCTGTACGACACTTCTTAGAAAATTGAAAAATT 532 || ||||| | | |||||||| || | | || |||||| |||||| || |||| Sbjct 50176438 ACGCATACAAAATAAGCCCATCTTCTGTTTCGATGAGCTTTCTTAAAAAATTAAACAATT 50176379 Query 533 CAATTTTCAT 542 |||| | ||| Sbjct 50176378 CAATATCCAT 50176369 Score = 114 bits (126), Expect = 3e-21 Identities = 103/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 36061 AAAAATCCCCACACTCGCAAAGTTTGGCGAC-TCTGAGTGTGAGGAACTTACGTATAAGA 36119 |||||||||||||||||| || | | | | ||||| |||||| | |||||||| Sbjct 30117585 AAAAATCCCCACACTCGCC---TTCGCCAAAATTTGAGTATGAGGATATCCAGTATAAGA 30117641 Query 36120 AACAACCATTCAAAAGGTCGTTTTCTTATACCCATTTTATCAAAAAAGTGAGGT-AAAAT 36178 |||||||||| ||||||||| ||| |||||||||||||||||| ||| |||||| ||||| Sbjct 30117642 AACAACCATTAAAAAGGTCGCTTTTTTATACCCATTTTATCAAGAAA-TGAGGTAAAAAT 30117700 Query 36179 CAATG 36183 ||||| Sbjct 30117701 CAATG 30117705 Score = 109 bits (120), Expect = 1e-19 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 1 TTGATGGTCTTTTCTCCACCTTTTTGAACCAGGTAGTCCTTGACTGCCCTAACTACAACC 60 ||||| ||||||||||| ||||||| || |||||||| ||||| ||| ||||| | | Sbjct 30081752 TTGATAGTCTTTTCTCCGCCTTTTTTGACAAGGTAGTCTTTGACCGCCTTAACTGCGATA 30081811 Query 61 CCTGCCAAAACGACTAGGATGCTGATTGCTCCATTAGTAATGATTTCAGTAATTTGTTGC 120 ||| || || ||||||||||| | |||||| || | || |||||| | ||||||||| Sbjct 30081812 CCTAGCATAATAACTAGGATGCTAACTGCTCCGTTTGCGATAATTTCATTGATTTGTTGC 30081871 Query 121 ATTTGTTATTCTCCT 135 | |||| ||||||| Sbjct 30081872 A-TTGTCTTTCTCCT 30081885 Score = 84.2 bits (92), Expect = 5e-12 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 25398 ATACCGCTTCTCTTCCTCGACCTCGTAGCCGTCCAGCCATGCACGAGCGAA 25448 |||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 30104999 ATACCGCTTCTCTTTCTCGACCTCGTAGCCGTCCAGCCAAGCACGAGCGAA 30105049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119542364510850