Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13 125 5e-24 seq18 118 8e-22 >seq13 Length=27080333 Score = 125 bits (138), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 44131 CAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAG 44190 ||||||||| ||| |||||| ||||| ||||| |||| || ||| | || ||||| Sbjct 11062551 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11062610 Query 44191 CTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTAT 44250 |||||| ||||||||||||| | |||||| || | || | || ||||| ||| || Sbjct 11062611 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11062670 Query 44251 CTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 ||| || | || |||| | ||||| || || |||||||||| || || || || | Sbjct 11062671 CTT-GGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGC 11062729 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| ||||| ||||| ||||| Sbjct 11062730 CGGTGAGGGTTTTCACAAAGATCTGCAT 11062757 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | || ||||| || ||| || || ||||||||||| |||| Sbjct 11060520 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 11060579 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||| || || |||||||||| | |||||| || | || Sbjct 11060580 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11060639 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| || | | |||| | ||||||||| || |||||| Sbjct 11060640 ATGCCCTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCAC 11060698 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || || || || ||||||||||| || ||||||||||| Sbjct 11060699 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11060746 >seq18 Length=80077792 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || ||| |||||| ||||| ||||| |||| Sbjct 51870046 CCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 51870105 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | |||||| || | || Sbjct 51870106 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 51870165 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| | ||| || | | |||| | |||||||| || || || Sbjct 51870166 ATGCCCTCCTTATCCTGGAGCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 51870224 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || || || || ||||||||||| |||||||| |||||| Sbjct 51870225 CTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 51870273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990290315425