Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq17 183 4e-41 seq19 131 2e-25 >seq17 Length=30456855 Score = 183 bits (202), Expect = 4e-41 Identities = 208/278 (75%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 8310 CCTTGA-CGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||| ||||| | || ||||| ||| | | ||| | |||||||| | || || Sbjct 29724423 CCTTGAACGTTGTTGCAAACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 29724364 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || || ||||||||||||||||||||| | || ||||| ||| ||| |||| Sbjct 29724363 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGATTCCCCATC 29724304 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||||||||||||||| |||||||||| ||| | || |||| || || |||||||| Sbjct 29724303 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 29724244 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 || |||||||| ||||| | | ||| ||| ||||||||||| || |||||||| || Sbjct 29724243 GGCCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGCTCCACAGCGTCAACGTCTCCATAC 29724184 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || ||| ||| || || || ||||||||||| Sbjct 29724183 AGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 29724146 Score = 132 bits (146), Expect = 7e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||| |||||| || ||| |||||| ||| ||||| || Sbjct 29722825 TCACCAATAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 29722766 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| ||| || ||||||| |||||| || | ||||||||| |||||||||||| Sbjct 29722765 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 29722706 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 ||||| || || ||||| || || ||||| || || ||||| Sbjct 29722705 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 29722665 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | ||| ||||| || || ||||| ||||| || | | Sbjct 29721847 TCACCTACGACTCCCATAGGGGTTGGGCAGTCAGCCGGAACTGGAGGAAGGGCACGGGTA 29721788 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| | |||||||||||| |||| | || ||||| ||||| | Sbjct 29721787 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAAGTA 29721728 Query 10028 GGAGGGCTGTCAATCAAATCGGATC 10052 ||||| |||||||||| || ||||| Sbjct 29721727 GGAGGACTGTCAATCATATGGGATC 29721703 >seq19 Length=33316517 Score = 131 bits (144), Expect = 2e-25 Identities = 182/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||||||| |||| ||||||||||| || ||||||||| ||| |||||||| Sbjct 26606628 CCAATAATGATAAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCG 26606569 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||| | || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 26606568 CCTTTCAGGATGTCACACACCCTGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 26606509 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCA-- 9412 || || || || || || || | || || ||||| || || ||| | |||| | Sbjct 26606508 AGGCCTGGGACGAGCCCGAACACTTCCTGTCCGACGGCGAGCCGCTGCTCAGCGGGGAAA 26606449 Query 9413 -CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 |||| ||| || | ||||| ||| |||| || ||| ||| || ||||| || Sbjct 26606448 CCTTC---AGGGTACACCATGTCCACTGGGACCTCAGACACCTTGGGAGGGTACATCTCC 26606392 Query 9472 CCGTCAATCATCTG 9485 || | |||| ||| Sbjct 26606391 CCATTGATCAGCTG 26606378 Score = 122 bits (134), Expect = 1e-22 Identities = 177/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 |||| |||| |||| ||| |||||| || || | ||| | | |||| ||| Sbjct 26613609 ACGGGCACCACTTGGTGTTCAGACAGACCAGTTTCTTCAGAGTCGACGTTTTGATGATGT 26613550 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 ||| ||| || || || ||||||||||||||||||||| | || ||| |||| | Sbjct 26613549 TGAAACCCGTCTCGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGAT 26613490 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 || | | |||||||| |||||||| || || |||| ||| | |||||||| ||||| | Sbjct 26613489 TCCCAAACAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATA 26613430 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 ||| |||||| || | || |||| || || |||| || | ||||| || || | || Sbjct 26613429 TGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCGGGATAAAACTCCAGGGCGTCAATGT 26613370 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 26613369 CGCCGTAGAG 26613360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716876575976000