Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq16 158 3e-33 seq13 158 3e-33 seq18 118 3e-21 >seq16 Length=24388307 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || |||||||||||||| ||||| || || || |||||||| ||||||| ||| || | Sbjct 2613049 CAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGG--AGCCCAGTG 2613106 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || |||||||||||| |||||||| || ||||| ||||||| Sbjct 2613107 ATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGC 2613166 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || | || || |||| Sbjct 2613167 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACG 2613226 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 2613227 TCCAGAAGGAGTCCACCCTCCACCTGGT 2613254 >seq13 Length=27080333 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || ||||| |||||||| ||||||||| | ||| Sbjct 11060743 CAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGCGAC 11060684 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| ||||| || || || ||||| || |||||||| Sbjct 11060683 ACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 11060624 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | || || |||| || ||| || Sbjct 11060623 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 11060564 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| || || || |||||| Sbjct 11060563 CAGAAAGAATCCACCCTCCACCTTGTT 11060537 >seq18 Length=80077792 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || ||||| |||||||| ||||| || || ||| Sbjct 51870269 CAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTTGA--GCCCAGTG 51870212 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||| | ||||| || || || ||||| || ||||||| Sbjct 51870211 ACACCATTGAGAACGTCAAGGCCAAGCTCCAGGATAAGGAGGGCATCCCCCCTGACCAGC 51870152 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || |||| || || Sbjct 51870151 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAATA 51870092 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 51870091 TCCAGAAGGAGTCCACCCTCCACCTGGT 51870064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730814429850