Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18 125 7e-24 seq13 116 3e-21 seq16 114 1e-20 >seq18 Length=80077792 Score = 125 bits (138), Expect = 7e-24 Identities = 163/223 (73%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| || || |||||||| |||||||| Sbjct 51870055 AGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGG 51870114 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||| | || |||| Sbjct 51870115 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 51870174 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| || || ||| |||| | || ||||| || | ||| ||||||| Sbjct 51870175 TTATCCTGGAGCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAG 51870230 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || || || ||||| ||||| ||||||||| Sbjct 51870231 GGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 51870273 >seq13 Length=27080333 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41656 CAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAG 41715 ||| || || ||| ||||||||| || || |||||||| |||||||| | || || || Sbjct 11062551 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11062610 Query 41716 CTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGAT 41775 |||||| ||||| || ||||| | ||| ||||| | ||| | || |||||| ||| ||| Sbjct 11062611 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11062670 Query 41776 TTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC 41834 || ||| |||| || | | || || | ||||||||||| || || ||||| | Sbjct 11062671 CTTGGCCTT-AACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGC 11062729 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || || || || || |||||||| || Sbjct 11062730 CGGTGAGGGTTTTCACAAAGATCTGCATCTT 11062760 >seq16 Length=24388307 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| | ||| ||||| || |||||||| Sbjct 2613263 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGG 2613204 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| ||||| | |||| || || Sbjct 2613203 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 2613144 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | ||||| | ||| || | | || || | ||||||||||| || Sbjct 2613143 TTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGT 2613085 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || || || |||||||||||||| || Sbjct 2613084 GATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2613043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303855530000