Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq28 102 7e-17 >seq28 Length=3093535 Score = 102 bits (112), Expect = 7e-17 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 18964 TCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGT-TGCAAACGGT 19022 ||||| |||||| || || || || ||| | | |||||||| ||||| ||| | ||| Sbjct 1720086 TCCCCATAATGGCGCTGCCCCCCTGCCACGCCCTCTGTCAGTTCTACGTCTGCGA-CGGG 1720028 Query 19023 GAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAAC 19082 || | ||||| || | |||||| | || | || ||||| || ||||| || |||||| Sbjct 1720027 GAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGGGTGCCTTTCAAC 1719968 Query 19083 ATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || || | ||||||||||| |||||||| | || || |||||||||| || Sbjct 1719967 ATCGCCAGCTATGCACTTCTCACCTACATGATTGCACACATTACAGGACTCAA 1719915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399403543720440