Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq110 426 2e-114 seq784 84.2 3e-11 >seq110 Length=1641499 Score = 426 bits (472), Expect = 2e-114 Identities = 1271/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || ||||| | | ||| || | | | | ||||| || || || Sbjct 1622946 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 1622887 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | || || ||||| |||| || || || ||||| || || ||||| |||| || Sbjct 1622886 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 1622827 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 1622826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 1622767 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | | ||||| || || || || | | ||| | |||||| Sbjct 1622766 AGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 1622707 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | ||| | | | || || || || || ||| || ||| | Sbjct 1622706 TCGGTCGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGC 1622649 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 | | || || ||||| || || || | || || || || || ||||| | || Sbjct 1622648 CCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGG 1622589 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 ||| || ||||| |||||||||| | || || || ||||| | || || || | Sbjct 1622588 CGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACG 1622529 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | | | || || || ||||| || | || || || || || ||||| || || | Sbjct 1622528 GGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 1622469 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | || ||||| |||| || || || || || || || || || | Sbjct 1622468 GGCGCTTGTTGGAAGTCTCCGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGT 1622409 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA- 53683 |||||||| | || ||||| ||| || ||| || || || || |||| Sbjct 1622408 TGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCCGC 1622350 Query 53684 TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 ||| | || ||||||| | || || || ||||| || || ||||| ||||| | Sbjct 1622349 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC- 1622291 Query 53741 GCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | | || | | | ||| ||||| || || || ||||||||||| || | | Sbjct 1622290 -CTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGT 1622232 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | || || || ||||| ||| || || ||||| || || ||| | || || || |||| Sbjct 1622231 TCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTT 1622172 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 | ||||||| || || || || | ||||| | ||||| | | || || Sbjct 1622171 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACTC 1622112 Query 53919 TCTTTTCTCTTTCGTATA--GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 || ||| | || ||| ||||| | || || ||||| |||||||| | ||| Sbjct 1622111 TCCCTTCCTTCTCATATTTGGTGTAGAGCTTC--TCGAACTCCTCTCCCCAGCACTCGTC 1622054 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 || ||||||||||| ||||||||||| ||||| || || || ||||| || Sbjct 1622053 CAGCCCAGGACATTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTT 1621994 Query 54037 CATAAAGAGATCAGGAATCCA-AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095 ||| || || ||||| ||||| ||| || ||| || ||||||| ||| || ||||| | Sbjct 1621993 CATGAACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCT 1621935 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 ||||||| ||||| || || || |||||| | | | || | ||||| || |||| | Sbjct 1621934 TTCCTGTGTTCTTCTTCAGCTCCAGGAACTCAAACACGTCGAAGTGCCATGGCTCCAGAT 1621875 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | | || || | ||||| || ||||| || | ||| | ||||||||| | Sbjct 1621874 ACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGT 1621815 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | |||||||||| ||| || | | || ||||| || ||||| || | ||| |||| Sbjct 1621814 TGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGC 1621755 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 |||| | | || || || | | | || ||||| || || || || || | Sbjct 1621754 TTCCTGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGA 1621695 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 ||||| | || | || || |||||||| || || || || ||| ||||| || | Sbjct 1621694 GCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCA 1621635 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | || || || |||| || | || | || || || || || | ||| ||||| |||| Sbjct 1621634 GGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGT 1621575 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || ||||| || || || || || ||||| ||||||| || | ||| || || | Sbjct 1621574 GGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCC 1621515 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || || || || | || | ||| | ||||||||| |||| || | | || || Sbjct 1621514 CGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGT 1621455 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || ||||||| |||||| |||| ||| || || || || ||||||| || || | Sbjct 1621454 TGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAAT 1621395 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 54695 ||| |||||||| || |||||||| ||||| | || | || | || | | Sbjct 1621394 CTCTGTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCG 1621335 Query 54696 TAATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTGACATAGTTAAAT 54751 | | ||| || || || ||||| | |||| || ||| ||||||||| || Sbjct 1621334 T-CTGCTTGGAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACATAGGCGAAC 1621279 Query 54752 AAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 | |||| |||||| || || || | || || || || || || || || || ||||| Sbjct 1621278 AGGTCCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCA 1621219 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 54871 || || ||||| || ||||| || || || |||| || || ||||| || || || Sbjct 1621218 ATCCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCC 1621159 Query 54872 GCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 54931 || | || ||||| | || || || || || || | || | || || || |||||| Sbjct 1621158 GCCGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTC 1621099 Query 54932 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 54990 || | || | | ||||| | | || | ||| | ||| || || || |||| || Sbjct 1621098 ATGGTGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGAT 1621040 Query 54991 ACGAGATGTGATTTTATCAAACATGAC 55017 || || |||||||||||||||||||| Sbjct 1621039 GCGGGAGGTGATTTTATCAAACATGAC 1621013 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 1623244 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 1623185 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 1623184 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 1623125 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 1623124 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 1623076 >seq784 Length=80426 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||| ||||||||||| || |||||||| | || | || || ||||||| ||| || Sbjct 24343 CACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTG 24402 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| || || || | ||| | | | ||||| ||||||||| Sbjct 24403 CTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACATCAGCATGCCACGG 24462 Query 54148 TTCCAAGTA 54156 |||| ||| Sbjct 24463 CTCCAGGTA 24471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593568479199360