Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq28 158 1e-33 >seq28 Length=3093535 Score = 158 bits (174), Expect = 1e-33 Identities = 143/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || || | ||| || | ||||||||| || || | |||||||| |||||||| Sbjct 1719914 CTTGAGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAA 1719973 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||||||||| |||||||| | ||||||||||||||||| ||||| ||||||||| | Sbjct 1719974 AGGCACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTC 1720033 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 ||||||||||| || ||| ||||||||| ||||| ||||| ||| ||||| || Sbjct 1720034 GCAGACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCATTATGGGGAGGTCTGC 1720093 Score = 100 bits (110), Expect = 3e-16 Identities = 116/156 (74%), Gaps = 8/156 (5%) Strand=Plus/Plus Query 146034 GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCC 146093 |||| |||| | || |||||||||||||| ||||| || || || || ||||||||||| Sbjct 1720808 GTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTCCCC 1720867 Query 146094 GGGCTCCCTGTGCCCCAGCCCGGCCCGGG----CGAGGAAGTCCCGGGACCCGTTGGCGT 146149 |||||| | | | |||| || | | |||||| |||||||||||||||| Sbjct 1720868 CTCCTCCCTCT----CTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGT 1720923 Query 146150 CCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGG 146185 |||||||||| || || || | || ||||| |||| Sbjct 1720924 CCCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGG 1720959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589924619193280