Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq176 132 4e-26 seq54 114 1e-20 seq4001 87.8 2e-12 seq9982 86.0 5e-12 >seq176 Length=1137095 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || | ||| | |||||||| || | ||||||||||| || ||||| ||||| | Sbjct 797729 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 797670 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || |||||||||||||| ||| | || || ||||||||||| || Sbjct 797669 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 797610 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||| || || |||||| ||||| | | | ||||||| ||||||| Sbjct 797609 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 797550 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||| |||||||| || || | ||||| || || || ||||| || Sbjct 797549 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 797499 >seq54 Length=2421293 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || || || ||||| | |||||| || | || |||||||| || || Sbjct 1257637 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 1257578 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || |||||| || Sbjct 1257577 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 1257518 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||||| ||| ||| |||| ||| ||||| |||||||| | ||| Sbjct 1257517 ACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 1257458 Query 21159 TTGACAAATATTTGCATTTTG 21179 || ||||| || ||||| ||| Sbjct 1257457 TTCACAAAGATCTGCATCTTG 1257437 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | |||||| || | || |||||||||||||| Sbjct 1259646 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 1259587 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| || || || ||| || || Sbjct 1259586 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTG 1259527 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||| ||| |||| ||| ||||| |||||||| | || Sbjct 1259526 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 1259467 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 1259466 TTGACAAAGATTTGCAT 1259450 >seq4001 Length=6841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || || || ||||| | |||||| || | ||||||||||| ||||| Sbjct 6693 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 6752 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| | || || ||||||||||| ||| | ||| ||||| || |||||| Sbjct 6753 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 6805 >seq9982 Length=962 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/202 (70%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG-TTTGC 21036 ||| || || || || ||||| ||||| | |||||| || | || |||||||| ||||| Sbjct 918 AGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTGC 859 Query 21037 CCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTT 21096 | ||| | || || ||||||||||| ||| | ||| ||||| || ||| || | Sbjct 858 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTAGCCT 799 Query 21097 TCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACG 21156 | || | | | || || | ||| ||| |||| ||| ||||| || || || | | Sbjct 798 TGACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAGTGAGGG 739 Query 21157 TTTTGACAAATATTTGCATTTT 21178 | |||||||| || ||||| || Sbjct 738 TCTTGACAAAGATCTGCATGTT 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422153021868512