Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq54 167 2e-36 seq176 152 5e-32 seq9982 136 4e-27 seq233 123 3e-23 seq4001 107 2e-18 seq17 84.2 2e-11 >seq54 Length=2421293 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||||||||||||| | || || ||| ||| | Sbjct 1259450 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 1259509 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| ||||| | || ||||||||||||||| | ||||| Sbjct 1259510 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCA 1259568 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || |||||||||||||| || | |||||||| ||||||||| Sbjct 1259569 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 1259628 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || || || || | || ||||||| ||| Sbjct 1259629 CATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGC 1259677 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| ||||| ||||||||||||||| | || || ||| || Sbjct 1257438 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCC 1257497 Query 40747 ACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | || |||| | |||| || || | || || |||||||||||| | || Sbjct 1257498 AGTGATACCATTGAGAACG-TTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 1257556 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || || || |||||||| || | |||||||| |||||| Sbjct 1257557 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 1257616 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| |||||||||||| |||| || || || Sbjct 1257617 CAATATCCAGAAGGAGTCCACCCTTCACCT 1257646 >seq176 Length=1137095 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| ||||| || || ||||||||| | || || || || Sbjct 797499 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 797558 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | |||| | |||| ||| |||| || ||||| ||||| || | || Sbjct 797559 AGTGATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGA 797617 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || |||||||||||||| || | |||||||| |||||| Sbjct 797618 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTA 797677 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || ||| | ||| ||||||| || Sbjct 797678 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 797728 >seq9982 Length=962 Score = 136 bits (150), Expect = 4e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| || |||||||||||| | || || ||| | Sbjct 716 AAACATGCAGATCTTTGTCAAGACCCTCACTGGTAAAACCATCACCCTGGAGGTGGAACC 775 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || ||||| | | | | |||||| ||||| | || || |||||||||||| | || Sbjct 776 CAGCGACACCATTGAGAATGTCAAGGCTAAAATCCAGGATAAGGAGGGCATCCCCCCTGA 835 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAA-CAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||| | || |||| || |||||| |||||||| || | |||||||| ||||| Sbjct 836 CCAGCAGAGGCTGATCTTTGCCGGCAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACT 895 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| || | || || || || || | || | ||||| || Sbjct 896 ACAACATCCAGAAAGAATCTACTCTCCACCTTGTCCTTCGTCTCAGGGGTGG 947 >seq233 Length=880882 Score = 123 bits (136), Expect = 3e-23 Identities = 102/122 (84%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| | |||| ||| | |||||| | Sbjct 604697 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCCCTGAAGGACGAGGAGCGCTAC 604639 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || ||||||||||||||||||||||||||||| ||| Sbjct 604638 TTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 604579 Query 116804 GT 116805 || Sbjct 604578 GT 604577 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||| || || ||||| ||||||| || || |||||| |||| || | Sbjct 604108 TGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCT 604049 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| |||||||||||||| |||||||||||||||||| | | | Sbjct 604048 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAG 603989 Query 117162 ACGAGG 117167 |||||| Sbjct 603988 ACGAGG 603983 Score = 107 bits (118), Expect = 2e-18 Identities = 95/117 (81%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||||||||||||| | ||||| |||| ||||||||||| || Sbjct 604497 GGTGGAGCGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCA 604438 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 604437 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 604383 >seq4001 Length=6841 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | || || |||||||||||| | |||||||| | || |||| | Sbjct 6813 TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTG 6754 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| || | |||||||| ||||||||| |||||||||||| ||| Sbjct 6753 CTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAATATCCAGAAGGAGTCCA 6694 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || || || || | || ||||||| ||| Sbjct 6693 CCCTCCACCTTGTTCTCCGTCTGAGGGGTGGC 6662 >seq17 Length=3631609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| || ||||| || || || || ||||| | ||||| || ||| ||||| Sbjct 3276911 GGGGAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCT 3276970 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || | ||||| ||||| | ||||||||||| ||||| || | | |||||| ||| Sbjct 3276971 GCTATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTC 3277030 Query 117152 ATCTCCAGGGACGAGG 117167 || |||||| |||| Sbjct 3277031 ATTAGCAGGGATGAGG 3277046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515086324968320