Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq110 156 4e-33 seq176 109 5e-19 seq54 102 7e-17 seq9982 98.7 9e-16 >seq110 Length=1641499 Score = 156 bits (172), Expect = 4e-33 Identities = 468/707 (66%), Gaps = 24/707 (3%) Strand=Plus/Minus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| ||| |||| || ||||||||||| || ||||| || || | ||||||||||||| Sbjct 1622838 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 1622779 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||||| || || ||| || ||||||| ||| | || || || || ||| Sbjct 1622778 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGATCTTTTCCTTCAGCAGCTTC 1622719 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||||| || || || | | || | ||||| | | | || || | || Sbjct 1622718 CAGTCCCAAAG---GTCGG-----TCGGCGTC-TTCTC--CCACAT-GTCGT---ACTGG 1622674 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| || || | || ||||| || ||||| ||| | ||| Sbjct 1622673 AGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 1622614 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGAC 133573 ||||||||||| ||||||| ||||| ||| ||||| || ||| || || ||||| Sbjct 1622613 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT-GTTGA- 1622556 Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAA 133631 | | ||| || ||| || ||| | | | || || | || | || |||||||||| | Sbjct 1622555 GCAGCTGAGCTTCGGGACTTTCGAACGGG-TGCCGCATCAGGATGAAGGCGTCGGCCAGA 1622497 Query 133632 CCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTG 133691 ||||| | ||||| ||||| || | || || ||| |||||| || | Sbjct 1622496 CCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTTCAGGAACC 1622437 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGT 133751 || |||| ||||| |||||||||||||||||| || ||||| | || || | Sbjct 1622436 GGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAG 1622377 Query 133752 TTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATA 133811 |||| |||| || ||| || | ||| |||| || |||||| ||| || Sbjct 1622376 GCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGATG 1622320 Query 133812 CTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAG 133871 ||| || || || |||||| ||||| || | | |||| || | ||| | |||| Sbjct 1622319 GAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAG 1622260 Query 133872 AGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCC 133931 ||||||||||| ||||||||||||| || | || ||||| |||||| ||| Sbjct 1622259 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCC 1622200 Query 133932 TTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 ||||| |||||||| || ||||||||| | || ||||| ||| Sbjct 1622199 TTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT 1622153 >seq176 Length=1137095 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 797711 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 797652 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| |||| || | |||||| || ||||| ||||| || || || Sbjct 797651 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 797592 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| || || | || | ||| || || ||| ||||| | ||| | || || Sbjct 797591 AATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 797532 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||||||||| Sbjct 797531 CCCAGTGAGGGTTTTCACGAAAATCTGCAT 797502 >seq54 Length=2421293 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || ||||| || |||||||| ||| || ||||| ||| || ||||| Sbjct 1259653 GTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 1259594 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| ||||| |||| || | |||||| || || || |||||||| || || ||||| Sbjct 1259593 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTT 1259534 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || || ||||| | ||| | ||||||||||| Sbjct 1259533 GGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGT 1259474 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| Sbjct 1259473 GAGGGTCTTGACAAAGATTTGCAT 1259450 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| ||| || ||||| ||| || ||||| ||||| Sbjct 1257637 GTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 1257578 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || || || ||||||||||| || || || ||| Sbjct 1257577 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 1257518 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || || ||||| | ||| | ||||||||||| || ||| Sbjct 1257517 ACGTTCTCAATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 1257458 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 1257457 TTCACAAAGATCTGCAT 1257441 >seq9982 Length=962 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||| ||||| || |||||||| ||| || ||||| ||| || ||||| Sbjct 924 GTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 865 Query 118595 TTTT-CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTT 118653 ||| || || |||| || | |||||| || || || ||||||||||| || |||| Sbjct 864 CTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTT 805 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | || || | || | |||||| || || ||||| | ||| | ||||| || | Sbjct 804 TAGCCTTGACATTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTACCAG 745 Query 118714 TCAGAGTTTTTACAAAAATCTGCATG 118739 | || || || ||||| ||||||||| Sbjct 744 TGAGGGTCTTGACAAAGATCTGCATG 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433721312261344