Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq25 201 8e-47 >seq25 Length=3217807 Score = 201 bits (222), Expect = 8e-47 Identities = 437/647 (68%), Gaps = 18/647 (3%) Strand=Plus/Minus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| | || || | | | || |||||||| ||||| || ||| | || |||||||||| Sbjct 2156220 AGTGAGGAGGAACAAAATTTTCCCATTGCATACTCCATAGTGATACACCAGAAGATTGAG 2156161 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | |||||||| || | ||| | | ||||| || |||||||| ||||||||||| | Sbjct 2156160 ATGTTTGAACGACTCTTACGATCTATTTATGCTCCACAGAACATCTACTGTGTCCATATT 2156101 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || ||||||| || | |||| | ||||| || ||| || |||||||||| ||| Sbjct 2156100 GACCTGAAGTCTTCACTGTCTTTTCACGAGGCTGTGAAGAAAATAGTTTCCTGCTTTCCC 2156041 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||| || | |||||||| || | || || ||||| || ||||||||||| || Sbjct 2156040 AATGTTTTTGTAGCCAGTAAATTAGAAAGTGTTGTGTATGCTTCATGGTCCAGAGTACAG 2155981 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTTA 107990 || || |||||||| ||| |||| |||| || ||| ||| | |||| ||| | Sbjct 2155980 GCAGATCTGAACTGCATGAAAGATCTGCTGCA---CTCTGAAGTTCAGTGGAGATACCTT 2155924 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 ||||||| || ||||||||||| ||||| || ||||| |||||||| || || Sbjct 2155923 TTGAATACCTGTGGGACAGACTTTCCCATTAAAACCAACAGGGAGATGGTGAAGGTTCTG 2155864 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || | | || || | |||||| |||| |||| | | || ||||| ||| | Sbjct 2155863 AAAGTCCTTAATGGGAGGAACAGCTTGGAAACTGAAGCCACCAGTGCCTCCAAGAAAGCT 2155804 Query 108111 CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG-CAAGATGAAGGA 108169 |||||| | |||| | | | || || ||| | | | | ||| | ||| ||| | Sbjct 2155803 CGCTGGCAGTACCACCACAATGTCACCAACAGGAT-CATCAGAACAGACGAGA-GAAAAA 2155746 Query 108170 CCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAG 108228 || || | || | ||| |||||| |||| || ||||| ||||||| ||| | | Sbjct 2155745 GCCCGCCACCCATCAGCAGCCCAATGTTCTCAGGAAACGCCTACTTTGTGGTCTCAAGGG 2155686 Query 108229 CCTTTGTCCAACATGTCTTAGACAACCCTAA-------ATCCCAAAGACTGGTTGAATGG 108281 ||||||| || | | | | ||| || || || | | | | || ||| Sbjct 2155685 CCTTTGTGAAATACCTGATGCAGAACGGGAACGGAGAGAT-TCAGAAATTCATGGAGTGG 2155627 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 | |||||||| || || || ||||| ||| | ||||||||||| || Sbjct 2155626 GAAAAAGACACATACAGTCCAGACGAGCACATGTGGGCCACCCTGCA 2155580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348181226939568