Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq110 174 3e-38 >seq110 Length=1641499 Score = 174 bits (192), Expect = 3e-38 Identities = 639/1000 (64%), Gaps = 32/1000 (3%) Strand=Plus/Plus Query 248437 GACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGT 248496 || |||||| | || ||| | || || |||||| | | |||||| ||||||| || Sbjct 1620995 GATGGGCGCCAGGAGCGCGTCATGTTTGATAAAATCACCTCCCGCATCCAGAAGCTTTGC 1621054 Query 248497 TATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGC 248556 || || ||| | || |||| || |||| | ||| || ||| || || |||| Sbjct 1621055 TACGGCCTGAACCCGGACTTTGTGGATCCGGCTCAGATCACCATGAAGGTGATACAGGGC 1621114 Query 248557 GTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTAC 248616 | |||| ||| || || || || || ||||| |||| ||||||| ||||| | Sbjct 1621115 TTGTACAGCGGCGTCACCACCGTGGAGCTAGACACGCTAGCGGCGGAGATCGCGGCCACC 1621174 Query 248617 ATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTT 248676 || ||| ||||||||||||| | | ||||||| |||||| |||||||| | || Sbjct 1621175 CTGACGACCAAACACCCCGACTACGCCATCCTGGCCGCGAGGATTGCCGTCTCCAACCTG 1621234 Query 248677 CACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCTACATGCCTATGGGA-- 248734 || || || || || || |||| ||| |||| ||||| ||||||| | Sbjct 1621235 CATAAGGAGACCAAGAAGGTGTTCAGCGAGGTGATGGAGGACCTGTTCGCCTATGTCAAC 1621294 Query 248735 ----TGG-----------TCGCCGATGACGTCCACAC-------CGTCAT--TCA-GGAC 248769 || || || |||| |||| | || ||| ||| ||| Sbjct 1621295 CCTCTGAACAAACGCCACTCTCCCATGATCTCCAAGCAGACGCTCGACATCGTCATGGAA 1621354 Query 248770 AACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTT 248829 ||| | ||| ||| || | | || |||| || |||||| ||| | ||||| Sbjct 1621355 AACAAGGACCGCCTCAACTCCTCCATCATTTACGACAGAGATTTCTCCTACAACTTCTTC 1621414 Query 248830 GCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGA 248889 | ||||| || |||||| || || || || || || | || || | | || ||| Sbjct 1621415 GGCTTCAAGACTCTGGAGCGTTCCTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGA 1621474 Query 248890 ATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTG 248949 ||||||||| | ||| | ||| | || ||||| ||| | ||||| || || Sbjct 1621475 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCC 1621534 Query 248950 CTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTC 249009 ||||||| |||| | || || ||| | || || ||| | ||||| |||||| Sbjct 1621535 GTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTC 1621594 Query 249010 AACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 |||||||| ||| | |||||| | ||||| || || |||||| | |||||| Sbjct 1621595 AACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGAC 1621654 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || ||||| || || ||| ||| ||||| || | ||| ||| Sbjct 1621655 AGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGC 1621714 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || ||||| | | || | ||||||| ||| || |||||| ||| || || Sbjct 1621715 GGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACAGGAAGCTACATCGCAGGCACCAAC 1621774 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || | || || | || || | | |||||| ||| | || Sbjct 1621775 GGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTACGTC 1621834 Query 249250 AACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGC 249305 |||||| | ||| | | || ||| | |||||||||||| |||| |||||| Sbjct 1621835 GACCAGGGC-GGCAACAAGAGACCCGGGGCCTTCGCCATGTATCTGGAGCCATGGCACTT 1621893 Query 249306 CGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCG 249365 ||| | || ||||||||||| |||| ||||||| || || ||| |||||| | Sbjct 1621894 CGACGTGTTTGAGTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAG 1621953 Query 249366 TGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||||| ||||||| | ||||| || | ||| |||||||| Sbjct 1621954 AGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATG 1621993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073482552536576