Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq110 457 8e-124 seq784 127 2e-24 seq54 107 2e-18 >seq110 Length=1641499 Score = 457 bits (506), Expect = 8e-124 Identities = 1057/1581 (67%), Gaps = 27/1581 (2%) Strand=Plus/Minus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||||| ||| ||||| || || | | || || ||| |||||||||| ||| Sbjct 1622977 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 1622918 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||| |||| || ||| |||| || | || ||||| ||||||| || | Sbjct 1622917 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 1622858 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| ||| |||| || || ||||| ||||| ||||| || Sbjct 1622857 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1622798 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTT--TGAA 22603 ||| || || || ||||| ||||||| ||| || ||| |||| |||||| || ||| Sbjct 1622797 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGAT 1622738 Query 22604 ATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATA 22663 |||| || | |||| | ||||||||| || |||| ||||||| || |||||||| Sbjct 1622737 CTTTTCCT--TCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTC---TTCTCCCACATG 1622683 Query 22664 TCGTATTGCAACACGCCGCGACTCGCCGGGCT-GCCTTCGTACGTTTCGTACGGACCATA 22722 ||||| || | | ||| || | ||||| ||| |||||||| ||||| || || | Sbjct 1622682 TCGTACTGGAGGATGCCCTTGCT-GACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCG-A 1622625 Query 22723 TATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTT 22781 || ||||| || |||||||| ||||||| ||| ||| || || ||||||||||| | Sbjct 1622624 GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCT 1622565 Query 22782 ---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACG 22838 | ||| || | || ||| || |||||| |||| ||||||| | ||| | Sbjct 1622564 GGATGTTGAGCAGCTGAGCTTCGG-GA--CTTTCGAACGGGTGCCGCATCAGGATGAAGG 1622508 Query 22839 CGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTG 22898 |||| |||| |||||| ||||| || |||||||| | || | || || | | Sbjct 1622507 CGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCG 1622448 Query 22899 CCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT- 22957 | || || | || || | || ||||| | |||| | |||| |||| ||| Sbjct 1622447 CTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTT---TTCACGATTA 1622391 Query 22958 --TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGT 23015 || || | | |||||| || | | | | || || ||| Sbjct 1622390 CCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGT 1622331 Query 23016 TGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAA 23075 ||| |||||| ||||| || ||||| |||||||||||||| ||| |||||||| || | Sbjct 1622330 TGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCA 1622271 Query 23076 TTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGAT 23135 || || || || ||||| ||||| || ||||||| || ||||||||| || || | Sbjct 1622270 CCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGT 1622211 Query 23136 TGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG 23195 |||| | ||||||||||||||||| || || || || ||| ||| ||||||||||| | Sbjct 1622210 TGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGG 1622151 Query 23196 CTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT-AC-CTGCCTTCTTCCTCGTACTT 23253 | ||| | ||| || | ||| | | | | || || ||||| | ||| || || Sbjct 1622150 CGTACCAGAGCTGCTGCGCCT--TCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTT 1622093 Query 23254 TTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG 23313 ||| | | || || || | || | || ||| |||| || || ||| | || Sbjct 1622092 GGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTGGG 1622033 Query 23314 ACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCA 23373 |||||| | ||| || | || || | |||| || || || || ||||| Sbjct 1622032 ACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCA 1621973 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 | |||||||| || || | ||| | | |||||| || || |||||||| |||| || Sbjct 1621972 CAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTC 1621913 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 || || || |||||||| ||||| ||||| || || | ||| || || || ||||| Sbjct 1621912 CAGGAACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCT 1621853 Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| ||||||||||| |||||||| || || ||||||||||| ||||| ||||||||||| Sbjct 1621852 CTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCAC 1621793 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 | |||||||| |||| ||| || | ||| | | ||| | | | Sbjct 1621792 CAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATGCAGCT 1621733 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 || | || || || || | || || || || | |||||| || ||||| ||||| Sbjct 1621732 CACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTC 1621673 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 ||||||||| ||||||||||| || || | |||| || ||| || |||| |||| Sbjct 1621672 GTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGG 1621613 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT 23793 | || |||| ||| || ||||| |||||| || || | | ||||| Sbjct 1621612 CCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAG 1621553 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 || ||||| || |||| |||||| || ||||| ||||| || || | | || | Sbjct 1621552 GAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCT 1621493 Query 23854 CATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACG 23913 ||| | ||||| || |||| |||| || ||||| || || | ||| || ||||| Sbjct 1621492 CATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACG 1621433 Query 23914 TTGCATCGTTTTAAATCCAAA 23934 | || || || || || || Sbjct 1621432 CTCCAGAGTCTTGAAGCCGAA 1621412 >seq784 Length=80426 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||| || ||||| || || || |||||||| |||| || || Sbjct 23872 CACCTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGT 23931 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||||||||| Sbjct 23932 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 23991 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||||||||||||||| || Sbjct 23992 ACCCGTCTCTGTCTGCGACTCGATGATGGC 24021 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | || ||||||| || | ||| | Sbjct 24339 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTC 24398 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| |||| |||||||| || ||||| || ||||||| Sbjct 24399 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACATCAGCATGCC 24458 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || | || || || ||||||| Sbjct 24459 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 24494 >seq54 Length=2421293 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || |||||||| |||||| | || || ||||| | Sbjct 1259450 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 1259509 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||| || || ||| | || || |||||| Sbjct 1259510 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 1259569 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||||||| ||||||| || || ||| || ||| Sbjct 1259570 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1259629 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || || || || || || | |||||||| || Sbjct 1259630 ATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 1259676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445651436845440