Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq19287 196 1e-45 >seq19287 Length=504 Score = 196 bits (216), Expect = 1e-45 Identities = 341/491 (69%), Gaps = 13/491 (3%) Strand=Plus/Minus Query 5242 ATGCGCAACGAAACCCGCAAACAGTTCGACGCCTAC-CTGGCGCAGCTCGCCAAGCTCAA 5300 ||||| |||||||||||| | ||||| ||| | | | ||| ||| | ||||| ||||| Sbjct 483 ATGCGTAACGAAACCCGCCAGAAGTTCAACGAGTTCACCGGC-CAGGTGGCCAAACTCAA 425 Query 5301 CGGCGTGAACTCCGCC---GTCCAGACCTTCGCCGTCGAGCCGAGTGTCCAGCAGAAGCT 5357 || | | | | |||| || ||| ||| ||| |||||| |||||||||| || Sbjct 424 CGCCATCACCAGCGCCATGGTGCAG---TTCAACGTGCAGCCGACCGTCCAGCAGACCCT 368 Query 5358 GGAG-CAACGTATTCAGGAGTCCAGCGAGTTCCTGAAGCAGATCAACGTCTACGGCGTCG 5416 ||| | | | || |||||||| || ||||| | |||||||||| | |||| Sbjct 367 GGAAACCAAG-ATGCAGGAGTCGGTCGCCTTCCTCGGGATGATCAACGTCATCCCTGTCG 309 Query 5417 ACGAGCTGCAGGGCGAGAAGATCGGCATCGGCGTCNNNNNNACCATCGCCAGCCGTACCG 5476 | || || | ||| | ||| |||| |||||| || ||||||||| | || ||| Sbjct 308 ATGAAATGAAAGGCCAAAAGGTCGGTATCGGCATCACCAGCACCATCGCCGGTCGCACCA 249 Query 5477 ATACCACTGGCGACGGTGTACGCAAGCCGCGCGACGTGTCCGCGCTCGACAACCAGCGTT 5536 | ||| | | | | ||| |||| | || | || ||| || ||||| | | Sbjct 248 ACACC---GACACCAAAGACCGCCAGCCCAACAACCCGCACGGTCTCTACGACCAGAGCT 192 Query 5537 ACGAGTGCAAGCACACCGACTTCGACACCGCAATCACCTACGCCATGCTCGACGCCTGGG 5596 |||| ||| || ||| ||||||||||| |||||||||| | | |||||||||||| Sbjct 191 ACGAATGCGCCCAGACCAACTTCGACACCCAGATCACCTACGGCCAGATCGACGCCTGGG 132 Query 5597 CCAAGTTCCCCGAGTTCCAGGCCCTGCTGCGCGACGCGATCCTCAAGCGCCAGGCCCTCG 5656 ||||||||||||| |||||| ||| | || ||||| ||||||| || |||| || | Sbjct 131 CCAAGTTCCCCGACTTCCAGACCCGTGTTCGTGACGCCATCCTCACCCGTCAGGGGCTGG 72 Query 5657 ACCGCCTGATGATCGGCTTCAACGGCACCAGCGCCGCGGCTACCACCAACCGCGCCGCCA 5716 ||||| | |||||||||| | ||||||| ||||| | |||| | ||| |||| Sbjct 71 ACCGCATCATGATCGGCTGGCATGGCACCACCGCCGAACCCGACACCGATCGCAACGCCC 12 Query 5717 ACCCGCTGCTG 5727 | || |||||| Sbjct 11 ATCCCCTGCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113706534503328