Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq13117 237 5e-58 >seq13117 Length=709 Score = 237 bits (262), Expect = 5e-58 Identities = 467/677 (69%), Gaps = 23/677 (3%) Strand=Plus/Minus Query 33385 GTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCA 33444 |||| | ||||| || || || || || || |||||||| |||| | ||| | | || Sbjct 661 GTTGACGATAGTAATTGGCTTCGGCCTCGGCCGGCGGGATGAAGCCAATCGGCCCGAGCA 602 Query 33445 GCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCG 33504 | || | |||||| ||||| ||||||| ||| ||| ||| ||| | | | | | || Sbjct 601 GGCGCCGGTGGTTGAACCAGTCGACCCAGCGCAGGGTTTCCAATTCCA--GCTCCTCGCG 544 Query 33505 TTTTC-CAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCG 33563 | | | ||| ||| || || | | ||||| |||||| || || ||||| || || Sbjct 543 GCTGCGCCAGGAACGC--CGGTGCACGACTTCCGCCTTGTAAAGTCCATTGATGGTCTCC 486 Query 33564 GCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCA 33623 || ||||| ||||||||| |||||| ||||||||| || || |||||||||||||| Sbjct 485 GCGAGCGCGTTGTCGTAGGAGTCGCCGACGCTGCCGACCGACGGTTCGATGCCGGCCTCG 426 Query 33624 GCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATC 33683 |||||||| ||| |||| || || |||||||| ||||| | |||| ||| || | | Sbjct 425 GCCAGCCGCTCGGTGTATCGGATCGACACGTATTGCGACCCGCGGTCGCTATGGTGGA-C 367 Query 33684 AAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACA 33743 || | | ||| ||| | ||||||||| |||||| || || || || || || || Sbjct 366 AAGG----GGCCT-GCCGAGCCGGCGGGCGTGCAGCGCCTGCTCGAGGGCGTCGAGCACG 312 Query 33744 AAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCG 33803 || | || | ||||| | | ||| || || || || | || | |||||| Sbjct 311 AACTGGGTTTGCTGGGACGACGACAGCTTCCAACCGACGATTCGCCTCGCATAGACGTCG 252 Query 33804 ATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACC 33863 |||||||| |||||||| |||| ||||| ||||| || | || | || ||| Sbjct 251 ATCACGAACGCCACGTAGGCAAAGCCCTGCCAGGTCGACACGAAGGTGTAGTCGCTGACC 192 Query 33864 CAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGG- 33922 || ||||| | ||||| || || |||| |||||||| || || |||||||||| ||| Sbjct 191 CACAGCTGGTCGGGTCGTTCGGCGGTGAAATGCCGGTTCACGCGATCCAGCGGGCACGGT 132 Query 33923 CGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAGCC 33982 ||| | | ||| | ||||||||| || | || || ||| |||| | | || Sbjct 131 CGC-GCCGGATCCGGCCGCGTCGTGCGCACCGTCCGGCCCCGGACTACGCC-TTCGATCC 74 Query 33983 CTGCAGCTT---CATCAACCGTCCGACCGTGCAGCGTGCCACCG--TAATGCCTTCCCGG 34037 | |||| | ||||| || |||| |||||||| ||||||| | ||| || ||| Sbjct 73 C--CAGCCTGCGCATCAGCCTCTCGACGGTGCAGCGCGCCACCGCCCAGTGC--TCGCGG 18 Query 34038 TTCATCTGCTTCCAGAC 34054 | || ||||||||| || Sbjct 17 TGCAGCTGCTTCCATAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170630184506640