Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20maculatus_20[refseq_20GCF_5F000241075.1_202012-01-06] 20,632 sequences; 729,664,433 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq110 439 3e-118 seq233 93.3 5e-14 seq784 82.4 1e-10 >seq110 Length=1641499 Score = 439 bits (486), Expect = 3e-118 Identities = 1293/1981 (65%), Gaps = 35/1981 (2%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||| |||||||| | | | || | | | ||||| ||||| || ||||| | | Sbjct 1622977 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 1622918 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | | | | ||||| || ||||| || | ||||| ||||| |||| || || Sbjct 1622917 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 1622858 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 1622857 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1622798 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| || | || || || | |||| | | ||||| Sbjct 1622797 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCTGAT 1622738 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 || || || || | | ||| | |||||| || | ||| | | ||| Sbjct 1622737 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCG-- 1622680 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || || || || || ||| || ||| || | || || || || || || Sbjct 1622679 -----TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA 1622625 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 || | || || | || || ||||| | || ||| || ||||| || ||||||| Sbjct 1622624 GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCT 1622565 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || || || ||||| || || || || || | | || || || |||| Sbjct 1622564 GGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGT 1622505 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || | || || || || || ||||| || || || | ||| || || | || |||| Sbjct 1622504 CGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCCGCTT 1622445 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | |||| || || || || || || || || || ||||| ||| | || ||||| ||| Sbjct 1622444 CAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG 1622385 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATG 62943 || ||| || || || || || ||| | || ||||||| | | Sbjct 1622384 TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGG 1622325 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTC 63001 | | || ||||| || || ||||| ||||| | | | | | || | | | ||| Sbjct 1622324 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTC 1622267 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||| || || || |||||||| || || | || || || || ||||| ||| || Sbjct 1622266 CGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCA 1622207 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 || ||||| || || ||| | || || || ||||| |||| || || || || || | Sbjct 1622206 AGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTA 1622147 Query 63122 CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTAT 63180 ||||| | || | ||||| | | || ||||| ||| | || ||| || | Sbjct 1622146 CCAGAGCTGCT-GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGT 1622088 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | | |||||||| |||||||| | ||||| | ||||||||| ||||||| Sbjct 1622087 AGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACATTCGCTGGGACACA 1622028 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 |||| ||||| || || || ||||| ||||| || || ||||| ||||| | | Sbjct 1622027 TCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGG 1621968 Query 63301 C-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 | || ||| || ||||| | ||| || ||||| |||||||| ||||| || || || ||| Sbjct 1621967 CGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 1621909 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 ||| | | | || | ||||| || |||| || ||||| | | || || | ||| Sbjct 1621908 AACTCAAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTG 1621849 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | Sbjct 1621848 TTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAAC 1621789 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 ||||| || | || ||||| || | ||| |||| ||| | | || || || | Sbjct 1621788 CCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCTGTCGATCGGATGCAGCTCACC 1621729 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | | || || || || || || || || | ||||| | || | ||||| ||| Sbjct 1621728 GCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAG 1621669 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 |||||||| ||||| || || ||||| || || || || || |||| || | || Sbjct 1621668 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGG 1621609 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || || || || | ||| ||||| ||||| || ||||| || || || || || Sbjct 1621608 TTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGG 1621549 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| ||||| | || | ||| || || | || || || || | || | ||| Sbjct 1621548 TTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATG 1621489 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| |||| || | | ||| ||| || |||| || |||||| ||| Sbjct 1621488 AGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCC 1621429 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | ||| || || || || ||||||| || || |||| |||||||| || || ||| Sbjct 1621428 AGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAGTTG 1621369 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAAT- 63957 || ||||| | || | || || || | || | ||| || || || ||||| | Sbjct 1621368 AGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTGCTTGGAGATCATGGGAGAGTG 1621310 Query 63958 --GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015 |||| || ||| || |||||| ||| | ||||||||||| || || || | Sbjct 1621309 GCGTTT---GTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACAC 1621253 Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 || || || ||||| || || || || | ||| || || ||||| || ||||| || || Sbjct 1621252 CTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTC 1621193 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 || |||| || || ||||| || || || || || || ||||| | || || || Sbjct 1621192 GGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGT 1621133 Query 64136 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64195 || || || | || | || || || |||||||| | || | | ||||| | | Sbjct 1621132 GGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAA 1621073 Query 64196 ATCCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGA 64254 |||| ||| | ||| ||||| || |||| || || || ||||||||||||||||||| Sbjct 1621072 GTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGA 1621014 Query 64255 C 64255 | Sbjct 1621013 C 1621013 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||| | || ||||| || || ||||| || | || || || || ||||| | Sbjct 1623244 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 1623185 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 1623184 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 1623125 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 1623124 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 1623076 >seq233 Length=880882 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 603983 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 604042 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| ||||| || || || ||||||||||| || || || || |||| Sbjct 604043 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 604102 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||||||||| Sbjct 604103 CCACCACTCTCTCTCC 604118 >seq784 Length=80426 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTT 62714 || || | |||||| ||||| | || |||| || |||||||||||||| | | || Sbjct 22716 GCCAGCTCACAACTGGCCTCCAGGGCGGCGTAGTAGATGGTTTCAAAGATGTGAATGTTG 22775 Query 62715 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 || || ||||| ||||| |||||||| || | ||| ||||| || || || | Sbjct 22776 AGTAACTGGGCTTCTGGGCTTTCAAATGGGTAGCGCATGAGGATAAAGGCATCAGCCAGA 22835 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGC 62824 || || ||||| || || ||||| || || | ||| || || ||||||| Sbjct 22836 CCCTGCACACCGATTCCAATAGGCCTGTGACGCTTGTTGGACTTTTCAGC 22885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629655170040960